Hb_001635_180

Information

Type -
Description -
Location Contig1635: 170617-172818
Sequence    

Annotation

kegg
ID pmum:103342872
description putative FBD-associated F-box protein At5g22720
nr
ID XP_012069034.1
description PREDICTED: F-box/FBD/LRR-repeat protein At5g53840-like [Jatropha curcas]
swissprot
ID Q93ZX6
description F-box/LRR-repeat protein At3g58900 OS=Arabidopsis thaliana GN=At3g58900 PE=2 SV=1
trembl
ID A0A067L8J6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24814 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14954: 170683-174779
cDNA
(Sanger)
(ID:Location)		 011_I02.ab1: 172037-174779

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001635_180 0.0 - - PREDICTED: F-box/FBD/LRR-repeat protein At5g53840-like [Jatropha curcas]
2 Hb_120410_010 0.0681003432 - - PREDICTED: vesicle-associated membrane protein 727-like [Solanum tuberosum]
3 Hb_002346_020 0.0777117527 - - -
4 Hb_005697_060 0.0778608872 transcription factor TF Family: HB PREDICTED: pathogenesis-related homeodomain protein isoform X1 [Jatropha curcas]
5 Hb_002530_030 0.0782111074 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4 [Jatropha curcas]
6 Hb_003428_030 0.0786026847 - - tRNA, putative [Ricinus communis]
7 Hb_003417_020 0.0786715479 - - PREDICTED: 50S ribosomal protein L13, chloroplastic [Jatropha curcas]
8 Hb_003416_010 0.0802599372 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 13 homolog B [Malus domestica]
9 Hb_005725_250 0.0807031469 - - PREDICTED: uncharacterized protein LOC105630805 isoform X1 [Jatropha curcas]
10 Hb_007576_080 0.0823818806 - - PREDICTED: uncharacterized protein LOC105643972 [Jatropha curcas]
11 Hb_003935_020 0.0826414048 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_004310_150 0.0827935148 - - PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera]
13 Hb_002534_150 0.0831421167 - - catalytic, putative [Ricinus communis]
14 Hb_000959_210 0.0833718102 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 27 [Jatropha curcas]
15 Hb_006120_070 0.0841102471 - - PREDICTED: ER membrane protein complex subunit 6 [Jatropha curcas]
16 Hb_001142_030 0.0847816763 - - PREDICTED: uncharacterized protein LOC105640023 [Jatropha curcas]
17 Hb_000580_180 0.0849471924 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000025_640 0.0853016394 - - PREDICTED: probable magnesium transporter NIPA6 isoform X1 [Jatropha curcas]
19 Hb_004093_090 0.0857848992 - - PREDICTED: uncharacterized protein LOC105633550 [Jatropha curcas]
20 Hb_008453_140 0.0869470712 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]

Gene co-expression network

sample Hb_001635_180 Hb_001635_180 Hb_120410_010 Hb_120410_010 Hb_001635_180--Hb_120410_010 Hb_002346_020 Hb_002346_020 Hb_001635_180--Hb_002346_020 Hb_005697_060 Hb_005697_060 Hb_001635_180--Hb_005697_060 Hb_002530_030 Hb_002530_030 Hb_001635_180--Hb_002530_030 Hb_003428_030 Hb_003428_030 Hb_001635_180--Hb_003428_030 Hb_003417_020 Hb_003417_020 Hb_001635_180--Hb_003417_020 Hb_008453_140 Hb_008453_140 Hb_120410_010--Hb_008453_140 Hb_004116_060 Hb_004116_060 Hb_120410_010--Hb_004116_060 Hb_001142_030 Hb_001142_030 Hb_120410_010--Hb_001142_030 Hb_120410_010--Hb_002530_030 Hb_002740_030 Hb_002740_030 Hb_120410_010--Hb_002740_030 Hb_010381_090 Hb_010381_090 Hb_120410_010--Hb_010381_090 Hb_047503_010 Hb_047503_010 Hb_002346_020--Hb_047503_010 Hb_001512_060 Hb_001512_060 Hb_002346_020--Hb_001512_060 Hb_001552_020 Hb_001552_020 Hb_002346_020--Hb_001552_020 Hb_002928_130 Hb_002928_130 Hb_002346_020--Hb_002928_130 Hb_000096_070 Hb_000096_070 Hb_002346_020--Hb_000096_070 Hb_002027_250 Hb_002027_250 Hb_002346_020--Hb_002027_250 Hb_007163_070 Hb_007163_070 Hb_005697_060--Hb_007163_070 Hb_006120_070 Hb_006120_070 Hb_005697_060--Hb_006120_070 Hb_028227_020 Hb_028227_020 Hb_005697_060--Hb_028227_020 Hb_000465_090 Hb_000465_090 Hb_005697_060--Hb_000465_090 Hb_001662_150 Hb_001662_150 Hb_005697_060--Hb_001662_150 Hb_001534_120 Hb_001534_120 Hb_005697_060--Hb_001534_120 Hb_000317_240 Hb_000317_240 Hb_002530_030--Hb_000317_240 Hb_001305_010 Hb_001305_010 Hb_002530_030--Hb_001305_010 Hb_000016_250 Hb_000016_250 Hb_002530_030--Hb_000016_250 Hb_004310_150 Hb_004310_150 Hb_002530_030--Hb_004310_150 Hb_011995_010 Hb_011995_010 Hb_002530_030--Hb_011995_010 Hb_007691_030 Hb_007691_030 Hb_003428_030--Hb_007691_030 Hb_003525_010 Hb_003525_010 Hb_003428_030--Hb_003525_010 Hb_000093_160 Hb_000093_160 Hb_003428_030--Hb_000093_160 Hb_000038_170 Hb_000038_170 Hb_003428_030--Hb_000038_170 Hb_003125_120 Hb_003125_120 Hb_003428_030--Hb_003125_120 Hb_000032_270 Hb_000032_270 Hb_003428_030--Hb_000032_270 Hb_003126_050 Hb_003126_050 Hb_003417_020--Hb_003126_050 Hb_003417_020--Hb_001305_010 Hb_003417_020--Hb_007691_030 Hb_003175_010 Hb_003175_010 Hb_003417_020--Hb_003175_010 Hb_019280_040 Hb_019280_040 Hb_003417_020--Hb_019280_040 Hb_007951_060 Hb_007951_060 Hb_003417_020--Hb_007951_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.82632 4.86091 6.53848 6.43869 11.4137 6.66236
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.48723 12.0742 6.92156 5.87412 4.84403

CAGE analysis