Hb_001635_210

Information

Type -
Description -
Location Contig1635: 221065-226463
Sequence    

Annotation

kegg
ID rcu:RCOM_1486170
description hypothetical protein
nr
ID XP_012069044.1
description PREDICTED: protein EARLY FLOWERING 3 isoform X1 [Jatropha curcas]
swissprot
ID O82804
description Protein EARLY FLOWERING 3 OS=Arabidopsis thaliana GN=ELF3 PE=1 SV=1
trembl
ID A0A067L8K0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24819 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001635_210 0.0 - - PREDICTED: protein EARLY FLOWERING 3 isoform X1 [Jatropha curcas]
2 Hb_002411_190 0.0691096728 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
3 Hb_000445_060 0.0698690182 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
4 Hb_008642_060 0.0762007538 - - PREDICTED: dynamin-related protein 1E isoform X2 [Jatropha curcas]
5 Hb_000359_130 0.0779383559 - - 4-hydroxyphenylpyruvate dioxygenase [Hevea brasiliensis]
6 Hb_000868_120 0.0781273811 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 2 [Jatropha curcas]
7 Hb_005288_070 0.0787788567 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
8 Hb_003929_210 0.0805097625 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
9 Hb_000030_140 0.0827224944 - - PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]
10 Hb_000996_020 0.0848995511 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
11 Hb_004324_360 0.0859785246 - - PREDICTED: uncharacterized protein LOC105650600 isoform X1 [Jatropha curcas]
12 Hb_000179_190 0.0863973137 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Vitis vinifera]
13 Hb_000975_210 0.0876863923 - - PREDICTED: THO complex subunit 4A [Jatropha curcas]
14 Hb_009158_060 0.0880861038 - - PREDICTED: CDPK-related kinase 3 [Jatropha curcas]
15 Hb_002126_030 0.0896197301 - - ferrochelatase, putative [Ricinus communis]
16 Hb_002768_050 0.0903937546 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
17 Hb_033312_130 0.0906341341 - - PREDICTED: protein TIC 40, chloroplastic [Jatropha curcas]
18 Hb_000110_350 0.0906371218 - - PREDICTED: ubiquitin receptor RAD23c-like isoform X2 [Gossypium raimondii]
19 Hb_001439_220 0.0907686126 - - xenotropic and polytropic murine leukemia virus receptor ids-4, putative [Ricinus communis]
20 Hb_005305_100 0.0914788769 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001635_210 Hb_001635_210 Hb_002411_190 Hb_002411_190 Hb_001635_210--Hb_002411_190 Hb_000445_060 Hb_000445_060 Hb_001635_210--Hb_000445_060 Hb_008642_060 Hb_008642_060 Hb_001635_210--Hb_008642_060 Hb_000359_130 Hb_000359_130 Hb_001635_210--Hb_000359_130 Hb_000868_120 Hb_000868_120 Hb_001635_210--Hb_000868_120 Hb_005288_070 Hb_005288_070 Hb_001635_210--Hb_005288_070 Hb_007012_030 Hb_007012_030 Hb_002411_190--Hb_007012_030 Hb_002600_070 Hb_002600_070 Hb_002411_190--Hb_002600_070 Hb_009158_060 Hb_009158_060 Hb_002411_190--Hb_009158_060 Hb_168893_030 Hb_168893_030 Hb_002411_190--Hb_168893_030 Hb_000748_090 Hb_000748_090 Hb_002411_190--Hb_000748_090 Hb_000996_020 Hb_000996_020 Hb_000445_060--Hb_000996_020 Hb_000445_060--Hb_000868_120 Hb_000110_350 Hb_000110_350 Hb_000445_060--Hb_000110_350 Hb_002768_050 Hb_002768_050 Hb_000445_060--Hb_002768_050 Hb_000661_120 Hb_000661_120 Hb_000445_060--Hb_000661_120 Hb_000373_170 Hb_000373_170 Hb_000445_060--Hb_000373_170 Hb_011457_140 Hb_011457_140 Hb_008642_060--Hb_011457_140 Hb_000358_220 Hb_000358_220 Hb_008642_060--Hb_000358_220 Hb_003929_210 Hb_003929_210 Hb_008642_060--Hb_003929_210 Hb_000179_190 Hb_000179_190 Hb_008642_060--Hb_000179_190 Hb_000008_280 Hb_000008_280 Hb_008642_060--Hb_000008_280 Hb_000030_140 Hb_000030_140 Hb_008642_060--Hb_000030_140 Hb_000359_130--Hb_002411_190 Hb_000359_130--Hb_000868_120 Hb_000359_130--Hb_005288_070 Hb_002126_030 Hb_002126_030 Hb_000359_130--Hb_002126_030 Hb_002928_140 Hb_002928_140 Hb_000359_130--Hb_002928_140 Hb_010287_020 Hb_010287_020 Hb_000868_120--Hb_010287_020 Hb_033642_120 Hb_033642_120 Hb_000868_120--Hb_033642_120 Hb_000676_330 Hb_000676_330 Hb_000868_120--Hb_000676_330 Hb_001439_220 Hb_001439_220 Hb_000868_120--Hb_001439_220 Hb_000868_120--Hb_000661_120 Hb_007283_010 Hb_007283_010 Hb_005288_070--Hb_007283_010 Hb_030414_040 Hb_030414_040 Hb_005288_070--Hb_030414_040 Hb_007044_110 Hb_007044_110 Hb_005288_070--Hb_007044_110 Hb_000205_260 Hb_000205_260 Hb_005288_070--Hb_000205_260 Hb_000457_230 Hb_000457_230 Hb_005288_070--Hb_000457_230 Hb_000111_170 Hb_000111_170 Hb_005288_070--Hb_000111_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.56407 9.63529 10.3862 4.7146 3.74589 4.59795
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.41836 3.1201 3.02671 5.58989 9.24015

CAGE analysis