Hb_001635_220

Information

Type transcription factor
Description TF Family: bHLH
Location Contig1635: 232437-233847
Sequence    

Annotation

kegg
ID rcu:RCOM_1486290
description DNA binding protein, putative
nr
ID XP_012069256.1
description PREDICTED: transcription factor bHLH87 [Jatropha curcas]
swissprot
ID Q8S3D2
description Transcription factor bHLH87 OS=Arabidopsis thaliana GN=BHLH87 PE=2 SV=1
trembl
ID B9RQ81
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1486290 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor bhlh87

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001635_220 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH87 [Jatropha curcas]
2 Hb_003913_100 0.0939394086 - - copper amine oxidase, putative [Ricinus communis]
3 Hb_000483_370 0.098508016 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000172_530 0.1026182366 - - PREDICTED: UBP1-associated protein 2B-like isoform X1 [Jatropha curcas]
5 Hb_004254_040 0.1030409099 - - PREDICTED: uncharacterized protein LOC105650678 [Jatropha curcas]
6 Hb_000603_200 0.106685163 - - PREDICTED: myosin-15 [Jatropha curcas]
7 Hb_000038_130 0.1098523946 - - -
8 Hb_001846_080 0.1130576855 - - PREDICTED: poly(rC)-binding protein 3-like [Nicotiana sylvestris]
9 Hb_006478_070 0.1164139672 - - PREDICTED: uncharacterized protein LOC105649957 [Jatropha curcas]
10 Hb_170116_010 0.1170518343 - - Geranyl diphosphate synthase 1 isoform 2 [Theobroma cacao]
11 Hb_012807_120 0.1205238089 - - metal ion binding protein, putative [Ricinus communis]
12 Hb_000320_440 0.1214309547 - - PREDICTED: tRNA wybutosine-synthesizing protein 2/3/4 isoform X1 [Jatropha curcas]
13 Hb_000329_620 0.1224071315 - - PREDICTED: uncharacterized protein LOC105643215 [Jatropha curcas]
14 Hb_012654_020 0.1229912175 - - conserved hypothetical protein [Ricinus communis]
15 Hb_043637_010 0.12392515 transcription factor TF Family: zf-HD hypothetical protein POPTR_0015s05220g, partial [Populus trichocarpa]
16 Hb_002172_030 0.1247145263 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105639104 isoform X1 [Jatropha curcas]
17 Hb_004032_460 0.1252613462 - - -
18 Hb_000365_350 0.1265007108 - - PREDICTED: uncharacterized protein LOC105649068 [Jatropha curcas]
19 Hb_003507_020 0.127738196 - - PREDICTED: uncharacterized protein LOC105641595 [Jatropha curcas]
20 Hb_000050_120 0.1284154302 - - PREDICTED: uncharacterized protein LOC105630790 [Jatropha curcas]

Gene co-expression network

sample Hb_001635_220 Hb_001635_220 Hb_003913_100 Hb_003913_100 Hb_001635_220--Hb_003913_100 Hb_000483_370 Hb_000483_370 Hb_001635_220--Hb_000483_370 Hb_000172_530 Hb_000172_530 Hb_001635_220--Hb_000172_530 Hb_004254_040 Hb_004254_040 Hb_001635_220--Hb_004254_040 Hb_000603_200 Hb_000603_200 Hb_001635_220--Hb_000603_200 Hb_000038_130 Hb_000038_130 Hb_001635_220--Hb_000038_130 Hb_002835_190 Hb_002835_190 Hb_003913_100--Hb_002835_190 Hb_000320_440 Hb_000320_440 Hb_003913_100--Hb_000320_440 Hb_001776_080 Hb_001776_080 Hb_003913_100--Hb_001776_080 Hb_012654_020 Hb_012654_020 Hb_003913_100--Hb_012654_020 Hb_003913_100--Hb_000172_530 Hb_001846_080 Hb_001846_080 Hb_000483_370--Hb_001846_080 Hb_000483_370--Hb_000603_200 Hb_002172_030 Hb_002172_030 Hb_000483_370--Hb_002172_030 Hb_000483_370--Hb_000172_530 Hb_006478_070 Hb_006478_070 Hb_000483_370--Hb_006478_070 Hb_001523_010 Hb_001523_010 Hb_000172_530--Hb_001523_010 Hb_000172_530--Hb_000320_440 Hb_000172_530--Hb_001846_080 Hb_000172_530--Hb_006478_070 Hb_000466_060 Hb_000466_060 Hb_000172_530--Hb_000466_060 Hb_005016_030 Hb_005016_030 Hb_000172_530--Hb_005016_030 Hb_000270_400 Hb_000270_400 Hb_004254_040--Hb_000270_400 Hb_000172_610 Hb_000172_610 Hb_004254_040--Hb_000172_610 Hb_001140_080 Hb_001140_080 Hb_004254_040--Hb_001140_080 Hb_012807_120 Hb_012807_120 Hb_004254_040--Hb_012807_120 Hb_000009_640 Hb_000009_640 Hb_004254_040--Hb_000009_640 Hb_001252_160 Hb_001252_160 Hb_000603_200--Hb_001252_160 Hb_002989_080 Hb_002989_080 Hb_000603_200--Hb_002989_080 Hb_003507_020 Hb_003507_020 Hb_000603_200--Hb_003507_020 Hb_043637_010 Hb_043637_010 Hb_000603_200--Hb_043637_010 Hb_007178_010 Hb_007178_010 Hb_000603_200--Hb_007178_010 Hb_000714_020 Hb_000714_020 Hb_000038_130--Hb_000714_020 Hb_000117_040 Hb_000117_040 Hb_000038_130--Hb_000117_040 Hb_002078_430 Hb_002078_430 Hb_000038_130--Hb_002078_430 Hb_000590_090 Hb_000590_090 Hb_000038_130--Hb_000590_090 Hb_004374_010 Hb_004374_010 Hb_000038_130--Hb_004374_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.02894 0.83367 0.193526 0.0612396 7.8262 7.42637
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.79453 2.61546 1.43462 0.420653 0.118274

CAGE analysis