Hb_001636_010

Information

Type -
Description -
Location Contig1636: 1415-19700
Sequence    

Annotation

kegg
ID rcu:RCOM_0339650
description Nodulation receptor kinase precursor, putative (EC:2.7.11.30)
nr
ID KDP44764.1
description hypothetical protein JCGZ_01264 [Jatropha curcas]
swissprot
ID Q06BH3
description Protein STRUBBELIG-RECEPTOR FAMILY 1 OS=Arabidopsis thaliana GN=SRF1 PE=2 SV=2
trembl
ID A0A067LKD0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01264 PE=4 SV=1
Gene Ontology
ID GO:0005622
description serine threonine-protein kinase-like protein ccr3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14963: 2335-2498 , PASA_asmbl_14964: 2662-2970 , PASA_asmbl_14965: 9377-9715 , PASA_asmbl_14967: 10472-10748 , PASA_asmbl_14969: 13148-13370
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001636_010 0.0 - - hypothetical protein JCGZ_01264 [Jatropha curcas]
2 Hb_010417_100 0.0832112782 - - PREDICTED: respiratory burst oxidase homolog protein A [Jatropha curcas]
3 Hb_020285_010 0.0848484801 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3, partial [Pyrus x bretschneideri]
4 Hb_007894_030 0.0892112167 - - calcium-dependent protein kinase, putative [Ricinus communis]
5 Hb_001421_010 0.097726577 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator-like APRR2 isoform X1 [Jatropha curcas]
6 Hb_038777_010 0.1012741726 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN2 isoform X1 [Populus euphratica]
7 Hb_001894_040 0.1018370106 - - PREDICTED: carbonic anhydrase 2 isoform X1 [Jatropha curcas]
8 Hb_046101_010 0.1076799641 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3 [Jatropha curcas]
9 Hb_064985_010 0.1094141226 - - Leucine-rich repeat transmembrane protein kinase, putative [Theobroma cacao]
10 Hb_000008_080 0.1100502056 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001369_070 0.1153568305 - - unnamed protein product [Vitis vinifera]
12 Hb_005357_020 0.1170428059 - - conserved hypothetical protein [Ricinus communis]
13 Hb_006316_030 0.117525775 - - aldehyde oxidase, putative [Ricinus communis]
14 Hb_000497_100 0.1184554602 - - respiratory burst oxidase D [Manihot esculenta]
15 Hb_004544_090 0.1201300963 - - cytochrome P450, putative [Ricinus communis]
16 Hb_000403_110 0.1215740033 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 51 [Jatropha curcas]
17 Hb_006788_100 0.1221678312 - - PREDICTED: uncharacterized protein LOC105649919 isoform X1 [Jatropha curcas]
18 Hb_000163_250 0.1236286638 - - unnamed protein product [Vitis vinifera]
19 Hb_011472_020 0.1245676883 - - PREDICTED: mucin-17-like [Jatropha curcas]
20 Hb_002276_100 0.1253936197 - - PREDICTED: UDP-glycosyltransferase 89A2-like [Jatropha curcas]

Gene co-expression network

sample Hb_001636_010 Hb_001636_010 Hb_010417_100 Hb_010417_100 Hb_001636_010--Hb_010417_100 Hb_020285_010 Hb_020285_010 Hb_001636_010--Hb_020285_010 Hb_007894_030 Hb_007894_030 Hb_001636_010--Hb_007894_030 Hb_001421_010 Hb_001421_010 Hb_001636_010--Hb_001421_010 Hb_038777_010 Hb_038777_010 Hb_001636_010--Hb_038777_010 Hb_001894_040 Hb_001894_040 Hb_001636_010--Hb_001894_040 Hb_005357_020 Hb_005357_020 Hb_010417_100--Hb_005357_020 Hb_010417_100--Hb_007894_030 Hb_000840_050 Hb_000840_050 Hb_010417_100--Hb_000840_050 Hb_000085_220 Hb_000085_220 Hb_010417_100--Hb_000085_220 Hb_000497_100 Hb_000497_100 Hb_010417_100--Hb_000497_100 Hb_020285_010--Hb_000497_100 Hb_046101_010 Hb_046101_010 Hb_020285_010--Hb_046101_010 Hb_001369_070 Hb_001369_070 Hb_020285_010--Hb_001369_070 Hb_020285_010--Hb_007894_030 Hb_020285_010--Hb_038777_010 Hb_002276_100 Hb_002276_100 Hb_020285_010--Hb_002276_100 Hb_007894_030--Hb_001369_070 Hb_007894_030--Hb_000497_100 Hb_007894_030--Hb_038777_010 Hb_175758_010 Hb_175758_010 Hb_001421_010--Hb_175758_010 Hb_010519_020 Hb_010519_020 Hb_001421_010--Hb_010519_020 Hb_000403_110 Hb_000403_110 Hb_001421_010--Hb_000403_110 Hb_011472_020 Hb_011472_020 Hb_001421_010--Hb_011472_020 Hb_001329_110 Hb_001329_110 Hb_001421_010--Hb_001329_110 Hb_008783_020 Hb_008783_020 Hb_001421_010--Hb_008783_020 Hb_038777_010--Hb_005357_020 Hb_038777_010--Hb_000497_100 Hb_001862_060 Hb_001862_060 Hb_038777_010--Hb_001862_060 Hb_000028_460 Hb_000028_460 Hb_038777_010--Hb_000028_460 Hb_000085_230 Hb_000085_230 Hb_001894_040--Hb_000085_230 Hb_008226_120 Hb_008226_120 Hb_001894_040--Hb_008226_120 Hb_000579_180 Hb_000579_180 Hb_001894_040--Hb_000579_180 Hb_001894_040--Hb_046101_010 Hb_001894_040--Hb_001862_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0123629 1.76984 0.847598 0.922922 0.00382352 0.0267866
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0340448 0.0131084 1.78384 0.555914

CAGE analysis