Hb_001636_050

Information

Type transcription factor
Description TF Family: NF-X1
Location Contig1636: 52933-62295
Sequence    

Annotation

kegg
ID rcu:RCOM_0179350
description nuclear transcription factor, X-box binding, putative
nr
ID XP_002533384.1
description nuclear transcription factor, X-box binding, putative [Ricinus communis]
swissprot
ID Q9FFK8
description NF-X1-type zinc finger protein NFXL2 OS=Arabidopsis thaliana GN=NFXL2 PE=1 SV=2
trembl
ID B9T565
description Nuclear transcription factor, X-box binding, putative OS=Ricinus communis GN=RCOM_0179350 PE=4 SV=1
Gene Ontology
ID GO:0005634
description nf-x1-type zinc finger protein nfxl2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14971: 53396-56947 , PASA_asmbl_14972: 56960-62160
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001636_050 0.0 transcription factor TF Family: NF-X1 nuclear transcription factor, X-box binding, putative [Ricinus communis]
2 Hb_007044_110 0.0524224241 - - nucleic acid binding protein, putative [Ricinus communis]
3 Hb_002067_030 0.0599148391 - - PREDICTED: poly(ADP-ribose) glycohydrolase 1-like isoform X2 [Jatropha curcas]
4 Hb_004976_010 0.0618438733 - - hypothetical protein RCOM_1429110 [Ricinus communis]
5 Hb_000645_170 0.062178825 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000236_470 0.0623765514 - - PREDICTED: pentatricopeptide repeat-containing protein At5g55840 [Jatropha curcas]
7 Hb_055235_020 0.0631573748 - - PREDICTED: probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 isoform X1 [Jatropha curcas]
8 Hb_005523_020 0.0657892845 - - MORPHEUS MOLECULE family protein [Populus trichocarpa]
9 Hb_000023_320 0.0668046878 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002701_150 0.0681410753 - - PREDICTED: probable tRNA (guanine(26)-N(2))-dimethyltransferase 2 isoform X2 [Jatropha curcas]
11 Hb_000457_230 0.0682088123 - - PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
12 Hb_000679_340 0.0688518122 - - PREDICTED: uncharacterized protein LOC105650070 isoform X1 [Jatropha curcas]
13 Hb_032264_060 0.0689102093 - - hypothetical protein JCGZ_02506 [Jatropha curcas]
14 Hb_000098_140 0.0704607509 - - hypothetical protein JCGZ_04989 [Jatropha curcas]
15 Hb_000836_410 0.07094052 - - sec10, putative [Ricinus communis]
16 Hb_000205_260 0.071669126 transcription factor TF Family: SNF2 hypothetical protein JCGZ_23567 [Jatropha curcas]
17 Hb_000264_070 0.0722745466 - - PREDICTED: uncharacterized protein LOC105649513 [Jatropha curcas]
18 Hb_001430_080 0.0737808064 - - PREDICTED: putative mediator of RNA polymerase II transcription subunit 26 [Jatropha curcas]
19 Hb_012565_050 0.0741049436 - - PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa [Jatropha curcas]
20 Hb_001277_020 0.0749410033 - - PREDICTED: armadillo repeat-containing protein LFR [Jatropha curcas]

Gene co-expression network

sample Hb_001636_050 Hb_001636_050 Hb_007044_110 Hb_007044_110 Hb_001636_050--Hb_007044_110 Hb_002067_030 Hb_002067_030 Hb_001636_050--Hb_002067_030 Hb_004976_010 Hb_004976_010 Hb_001636_050--Hb_004976_010 Hb_000645_170 Hb_000645_170 Hb_001636_050--Hb_000645_170 Hb_000236_470 Hb_000236_470 Hb_001636_050--Hb_000236_470 Hb_055235_020 Hb_055235_020 Hb_001636_050--Hb_055235_020 Hb_000205_260 Hb_000205_260 Hb_007044_110--Hb_000205_260 Hb_000457_230 Hb_000457_230 Hb_007044_110--Hb_000457_230 Hb_007044_110--Hb_055235_020 Hb_005523_020 Hb_005523_020 Hb_007044_110--Hb_005523_020 Hb_007044_110--Hb_004976_010 Hb_000098_140 Hb_000098_140 Hb_002067_030--Hb_000098_140 Hb_154580_010 Hb_154580_010 Hb_002067_030--Hb_154580_010 Hb_000260_680 Hb_000260_680 Hb_002067_030--Hb_000260_680 Hb_013394_030 Hb_013394_030 Hb_002067_030--Hb_013394_030 Hb_000329_590 Hb_000329_590 Hb_002067_030--Hb_000329_590 Hb_012565_050 Hb_012565_050 Hb_004976_010--Hb_012565_050 Hb_004976_010--Hb_055235_020 Hb_001430_080 Hb_001430_080 Hb_004976_010--Hb_001430_080 Hb_001673_050 Hb_001673_050 Hb_004976_010--Hb_001673_050 Hb_003927_040 Hb_003927_040 Hb_000645_170--Hb_003927_040 Hb_008568_020 Hb_008568_020 Hb_000645_170--Hb_008568_020 Hb_000645_170--Hb_001430_080 Hb_004236_050 Hb_004236_050 Hb_000645_170--Hb_004236_050 Hb_000645_170--Hb_154580_010 Hb_001277_020 Hb_001277_020 Hb_000236_470--Hb_001277_020 Hb_000640_310 Hb_000640_310 Hb_000236_470--Hb_000640_310 Hb_002701_150 Hb_002701_150 Hb_000236_470--Hb_002701_150 Hb_001047_200 Hb_001047_200 Hb_000236_470--Hb_001047_200 Hb_120803_010 Hb_120803_010 Hb_000236_470--Hb_120803_010 Hb_000556_170 Hb_000556_170 Hb_000236_470--Hb_000556_170 Hb_000318_120 Hb_000318_120 Hb_055235_020--Hb_000318_120 Hb_011972_020 Hb_011972_020 Hb_055235_020--Hb_011972_020 Hb_055235_020--Hb_000457_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.30426 11.4323 11.3652 4.84442 9.6315 6.6536
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.54781 5.14963 3.7485 6.18015 7.53033

CAGE analysis