Hb_001638_010

Information

Type -
Description -
Location Contig1638: 49419-53340
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14976: 52666-53057
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001638_010 0.0 - - -
2 Hb_000260_150 0.2293425576 - - hypothetical protein POPTR_0344s002001g, partial [Populus trichocarpa]
3 Hb_002257_020 0.2896377968 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
4 Hb_002608_020 0.2910713841 transcription factor TF Family: MYB PREDICTED: myb-related protein 305 [Jatropha curcas]
5 Hb_002401_010 0.3023021737 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
6 Hb_001437_020 0.3035864598 - - PREDICTED: uncharacterized protein LOC105628060 isoform X2 [Jatropha curcas]
7 Hb_167452_010 0.3191741935 - - hypothetical protein JCGZ_03682 [Jatropha curcas]
8 Hb_015175_010 0.3316342428 - - hypothetical protein JCGZ_17977 [Jatropha curcas]
9 Hb_098988_010 0.335843469 - - hypothetical protein JCGZ_18539 [Jatropha curcas]
10 Hb_001501_050 0.3392643652 - - Wall associated kinase-like 6, putative [Theobroma cacao]
11 Hb_000684_170 0.3418838436 - - -
12 Hb_002211_040 0.3453239426 - - PREDICTED: subtilisin-like protease SBT3.5 [Jatropha curcas]
13 Hb_187136_010 0.349926311 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
14 Hb_156850_080 0.3501881363 - - PREDICTED: uncharacterized protein LOC105635247 [Jatropha curcas]
15 Hb_002284_110 0.3595360747 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP18, chloroplastic isoform X2 [Solanum lycopersicum]
16 Hb_017647_020 0.3606564382 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
17 Hb_005725_190 0.3616282881 - - hypothetical protein JCGZ_15992 [Jatropha curcas]
18 Hb_104498_030 0.3654609973 - - hypothetical protein JCGZ_11092 [Jatropha curcas]
19 Hb_016859_010 0.3702025032 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
20 Hb_143629_030 0.3710690337 - - hypothetical protein JCGZ_23143 [Jatropha curcas]

Gene co-expression network

sample Hb_001638_010 Hb_001638_010 Hb_000260_150 Hb_000260_150 Hb_001638_010--Hb_000260_150 Hb_002257_020 Hb_002257_020 Hb_001638_010--Hb_002257_020 Hb_002608_020 Hb_002608_020 Hb_001638_010--Hb_002608_020 Hb_002401_010 Hb_002401_010 Hb_001638_010--Hb_002401_010 Hb_001437_020 Hb_001437_020 Hb_001638_010--Hb_001437_020 Hb_167452_010 Hb_167452_010 Hb_001638_010--Hb_167452_010 Hb_006925_090 Hb_006925_090 Hb_000260_150--Hb_006925_090 Hb_011505_010 Hb_011505_010 Hb_000260_150--Hb_011505_010 Hb_000260_150--Hb_002257_020 Hb_000260_150--Hb_167452_010 Hb_114435_010 Hb_114435_010 Hb_000260_150--Hb_114435_010 Hb_002257_020--Hb_002608_020 Hb_002257_020--Hb_114435_010 Hb_122873_010 Hb_122873_010 Hb_002257_020--Hb_122873_010 Hb_000122_240 Hb_000122_240 Hb_002257_020--Hb_000122_240 Hb_038098_010 Hb_038098_010 Hb_002257_020--Hb_038098_010 Hb_002257_020--Hb_001437_020 Hb_002608_020--Hb_000122_240 Hb_002608_020--Hb_001437_020 Hb_002608_020--Hb_114435_010 Hb_002608_020--Hb_122873_010 Hb_002211_040 Hb_002211_040 Hb_002401_010--Hb_002211_040 Hb_002301_200 Hb_002301_200 Hb_002401_010--Hb_002301_200 Hb_143629_030 Hb_143629_030 Hb_002401_010--Hb_143629_030 Hb_005725_190 Hb_005725_190 Hb_002401_010--Hb_005725_190 Hb_000111_300 Hb_000111_300 Hb_002401_010--Hb_000111_300 Hb_001902_150 Hb_001902_150 Hb_002401_010--Hb_001902_150 Hb_000960_070 Hb_000960_070 Hb_001437_020--Hb_000960_070 Hb_126907_010 Hb_126907_010 Hb_001437_020--Hb_126907_010 Hb_084611_010 Hb_084611_010 Hb_001437_020--Hb_084611_010 Hb_000014_140 Hb_000014_140 Hb_001437_020--Hb_000014_140 Hb_000853_040 Hb_000853_040 Hb_167452_010--Hb_000853_040 Hb_021346_040 Hb_021346_040 Hb_167452_010--Hb_021346_040 Hb_010661_040 Hb_010661_040 Hb_167452_010--Hb_010661_040 Hb_000392_460 Hb_000392_460 Hb_167452_010--Hb_000392_460 Hb_016859_010 Hb_016859_010 Hb_167452_010--Hb_016859_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.158709 0.0250855 0 0 0.0277737
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0568309 0 0 0

CAGE analysis