Hb_001638_070

Information

Type transcription factor
Description TF Family: bHLH
Location Contig1638: 87566-89035
Sequence    

Annotation

kegg
ID tcc:TCM_005064
description Basic helix-loop-helix DNA-binding family protein
nr
ID XP_007051457.1
description Basic helix-loop-helix DNA-binding family protein [Theobroma cacao]
swissprot
ID O49687
description Transcription factor MYC4 OS=Arabidopsis thaliana GN=MYC4 PE=1 SV=1
trembl
ID A0A061DS37
description Basic helix-loop-helix DNA-binding family protein OS=Theobroma cacao GN=TCM_005064 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor myc2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001638_070 0.0 transcription factor TF Family: bHLH Basic helix-loop-helix DNA-binding family protein [Theobroma cacao]
2 Hb_009680_040 0.1964214291 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
3 Hb_000997_190 0.2195334532 - - PREDICTED: magnesium transporter MRS2-I-like [Jatropha curcas]
4 Hb_002784_100 0.2329456727 - - PREDICTED: uncharacterized protein LOC105631246 [Jatropha curcas]
5 Hb_002231_030 0.2361675295 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
6 Hb_028271_020 0.2373651243 - - acyl-CoA oxidase, putative [Ricinus communis]
7 Hb_001488_370 0.2385032591 - - Esterase PIR7B, putative [Ricinus communis]
8 Hb_001437_130 0.2385642765 - - hypothetical protein F383_15788 [Gossypium arboreum]
9 Hb_003777_360 0.2443073139 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
10 Hb_012022_140 0.2467551861 - - ADP,ATP carrier protein, putative [Ricinus communis]
11 Hb_004089_020 0.2480244166 - - PREDICTED: 3-phosphoinositide-dependent protein kinase 2 [Jatropha curcas]
12 Hb_183612_060 0.2515291472 - - PREDICTED: uncharacterized protein LOC105632253 [Jatropha curcas]
13 Hb_026687_010 0.2530183363 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Eucalyptus grandis]
14 Hb_000676_310 0.2533462012 - - BnaC09g40680D [Brassica napus]
15 Hb_006615_080 0.256247855 - - PREDICTED: uncharacterized protein LOC105640684 isoform X2 [Jatropha curcas]
16 Hb_000099_070 0.2567612983 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
17 Hb_000140_360 0.2591463531 - - PREDICTED: uncharacterized protein LOC105642906 [Jatropha curcas]
18 Hb_005147_010 0.2610861236 - - PREDICTED: uncharacterized protein LOC105629670 [Jatropha curcas]
19 Hb_000622_080 0.2623860668 - - auxin-responsive GH3 family protein [Hevea brasiliensis]
20 Hb_005015_030 0.2626194437 - - PREDICTED: uncharacterized protein LOC105636546 [Jatropha curcas]

Gene co-expression network

sample Hb_001638_070 Hb_001638_070 Hb_009680_040 Hb_009680_040 Hb_001638_070--Hb_009680_040 Hb_000997_190 Hb_000997_190 Hb_001638_070--Hb_000997_190 Hb_002784_100 Hb_002784_100 Hb_001638_070--Hb_002784_100 Hb_002231_030 Hb_002231_030 Hb_001638_070--Hb_002231_030 Hb_028271_020 Hb_028271_020 Hb_001638_070--Hb_028271_020 Hb_001488_370 Hb_001488_370 Hb_001638_070--Hb_001488_370 Hb_003398_140 Hb_003398_140 Hb_009680_040--Hb_003398_140 Hb_009680_040--Hb_028271_020 Hb_003540_200 Hb_003540_200 Hb_009680_040--Hb_003540_200 Hb_009680_040--Hb_001488_370 Hb_009680_040--Hb_000997_190 Hb_001172_120 Hb_001172_120 Hb_000997_190--Hb_001172_120 Hb_006006_050 Hb_006006_050 Hb_000997_190--Hb_006006_050 Hb_001235_110 Hb_001235_110 Hb_000997_190--Hb_001235_110 Hb_006478_160 Hb_006478_160 Hb_000997_190--Hb_006478_160 Hb_000567_410 Hb_000567_410 Hb_000997_190--Hb_000567_410 Hb_000997_190--Hb_002231_030 Hb_033834_050 Hb_033834_050 Hb_002784_100--Hb_033834_050 Hb_002784_100--Hb_028271_020 Hb_001449_100 Hb_001449_100 Hb_002784_100--Hb_001449_100 Hb_000656_410 Hb_000656_410 Hb_002784_100--Hb_000656_410 Hb_011609_110 Hb_011609_110 Hb_002784_100--Hb_011609_110 Hb_042871_010 Hb_042871_010 Hb_002784_100--Hb_042871_010 Hb_007044_060 Hb_007044_060 Hb_002231_030--Hb_007044_060 Hb_003044_090 Hb_003044_090 Hb_002231_030--Hb_003044_090 Hb_000906_040 Hb_000906_040 Hb_002231_030--Hb_000906_040 Hb_000487_230 Hb_000487_230 Hb_002231_030--Hb_000487_230 Hb_000699_090 Hb_000699_090 Hb_002231_030--Hb_000699_090 Hb_028271_020--Hb_001449_100 Hb_012053_010 Hb_012053_010 Hb_028271_020--Hb_012053_010 Hb_028271_020--Hb_003540_200 Hb_028271_020--Hb_033834_050 Hb_028271_020--Hb_000997_190 Hb_012545_050 Hb_012545_050 Hb_001488_370--Hb_012545_050 Hb_012053_050 Hb_012053_050 Hb_001488_370--Hb_012053_050 Hb_001369_600 Hb_001369_600 Hb_001488_370--Hb_001369_600 Hb_001488_370--Hb_000997_190 Hb_001437_130 Hb_001437_130 Hb_001488_370--Hb_001437_130 Hb_001776_170 Hb_001776_170 Hb_001488_370--Hb_001776_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.18432 43.7265 42.9592 7.60201 2.7796 5.25397
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.68977 169.569 61.1369 22.2702 17.1887

CAGE analysis