Hb_001638_090

Information

Type -
Description -
Location Contig1638: 93324-96179
Sequence    

Annotation

kegg
ID pop:POPTR_0014s09970g
description POPTRDRAFT_824056; GRF1-INTERACTING FACTOR 2 family protein
nr
ID XP_002320892.1
description GRF1-INTERACTING FACTOR 2 family protein [Populus trichocarpa]
swissprot
ID Q93VH6
description GRF1-interacting factor 3 OS=Arabidopsis thaliana GN=GIF3 PE=1 SV=1
trembl
ID B9I931
description GRF1-INTERACTING FACTOR 2 family protein OS=Populus trichocarpa GN=POPTR_0014s09970g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14991: 96272-96678
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001638_090 0.0 - - GRF1-INTERACTING FACTOR 2 family protein [Populus trichocarpa]
2 Hb_000648_080 0.110693421 - - PREDICTED: serine/arginine repetitive matrix protein 1 isoform X2 [Populus euphratica]
3 Hb_001104_110 0.1207396698 - - PREDICTED: splicing factor U2af small subunit B-like [Populus euphratica]
4 Hb_016734_060 0.1213450194 - - PREDICTED: nucleolar protein 6 [Jatropha curcas]
5 Hb_000768_180 0.1214082521 - - PREDICTED: uncharacterized protein LOC105632528 [Jatropha curcas]
6 Hb_004916_020 0.1236116207 - - PREDICTED: DNA ligase 4 [Jatropha curcas]
7 Hb_002890_120 0.1255914864 - - Nucleic acid binding,RNA binding isoform 1 [Theobroma cacao]
8 Hb_007426_060 0.1262865035 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
9 Hb_000398_020 0.1263804413 - - PREDICTED: superkiller viralicidic activity 2-like 2 isoform X1 [Jatropha curcas]
10 Hb_002016_090 0.1294552457 - - PREDICTED: DNA mismatch repair protein PMS1 [Jatropha curcas]
11 Hb_000169_170 0.1299259296 - - 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis]
12 Hb_001935_140 0.1300675423 - - CCR4-NOT transcription complex subunit 1 [Gossypium arboreum]
13 Hb_000862_040 0.1303458892 - - ara4-interacting protein, putative [Ricinus communis]
14 Hb_002217_430 0.1309850345 - - PREDICTED: flowering time control protein FCA isoform X4 [Jatropha curcas]
15 Hb_000823_030 0.1316392859 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC5 [Jatropha curcas]
16 Hb_000631_120 0.1325192869 - - hypothetical protein CISIN_1g0431902mg, partial [Citrus sinensis]
17 Hb_000094_320 0.132815957 - - hypothetical protein JCGZ_04407 [Jatropha curcas]
18 Hb_007054_040 0.1343389242 - - PREDICTED: protein RST1 [Jatropha curcas]
19 Hb_003750_060 0.1348598561 - - PREDICTED: protein TIC 40, chloroplastic [Jatropha curcas]
20 Hb_002005_090 0.1356176377 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001638_090 Hb_001638_090 Hb_000648_080 Hb_000648_080 Hb_001638_090--Hb_000648_080 Hb_001104_110 Hb_001104_110 Hb_001638_090--Hb_001104_110 Hb_016734_060 Hb_016734_060 Hb_001638_090--Hb_016734_060 Hb_000768_180 Hb_000768_180 Hb_001638_090--Hb_000768_180 Hb_004916_020 Hb_004916_020 Hb_001638_090--Hb_004916_020 Hb_002890_120 Hb_002890_120 Hb_001638_090--Hb_002890_120 Hb_000398_020 Hb_000398_020 Hb_000648_080--Hb_000398_020 Hb_140049_040 Hb_140049_040 Hb_000648_080--Hb_140049_040 Hb_000640_310 Hb_000640_310 Hb_000648_080--Hb_000640_310 Hb_000648_080--Hb_002890_120 Hb_000406_230 Hb_000406_230 Hb_000648_080--Hb_000406_230 Hb_000264_030 Hb_000264_030 Hb_000648_080--Hb_000264_030 Hb_002641_030 Hb_002641_030 Hb_001104_110--Hb_002641_030 Hb_004934_050 Hb_004934_050 Hb_001104_110--Hb_004934_050 Hb_001104_110--Hb_016734_060 Hb_000631_120 Hb_000631_120 Hb_001104_110--Hb_000631_120 Hb_049436_010 Hb_049436_010 Hb_001104_110--Hb_049436_010 Hb_001031_090 Hb_001031_090 Hb_001104_110--Hb_001031_090 Hb_016734_060--Hb_001031_090 Hb_002046_010 Hb_002046_010 Hb_016734_060--Hb_002046_010 Hb_002217_430 Hb_002217_430 Hb_016734_060--Hb_002217_430 Hb_002016_090 Hb_002016_090 Hb_016734_060--Hb_002016_090 Hb_002805_210 Hb_002805_210 Hb_016734_060--Hb_002805_210 Hb_027472_220 Hb_027472_220 Hb_016734_060--Hb_027472_220 Hb_005260_010 Hb_005260_010 Hb_000768_180--Hb_005260_010 Hb_000862_040 Hb_000862_040 Hb_000768_180--Hb_000862_040 Hb_000556_170 Hb_000556_170 Hb_000768_180--Hb_000556_170 Hb_005542_050 Hb_005542_050 Hb_000768_180--Hb_005542_050 Hb_000236_220 Hb_000236_220 Hb_000768_180--Hb_000236_220 Hb_010712_090 Hb_010712_090 Hb_000768_180--Hb_010712_090 Hb_004916_020--Hb_000648_080 Hb_004916_020--Hb_000398_020 Hb_001541_250 Hb_001541_250 Hb_004916_020--Hb_001541_250 Hb_012565_050 Hb_012565_050 Hb_004916_020--Hb_012565_050 Hb_003666_020 Hb_003666_020 Hb_004916_020--Hb_003666_020 Hb_000289_040 Hb_000289_040 Hb_004916_020--Hb_000289_040 Hb_008103_070 Hb_008103_070 Hb_002890_120--Hb_008103_070 Hb_000236_400 Hb_000236_400 Hb_002890_120--Hb_000236_400 Hb_032202_120 Hb_032202_120 Hb_002890_120--Hb_032202_120 Hb_002890_120--Hb_000398_020 Hb_000710_040 Hb_000710_040 Hb_002890_120--Hb_000710_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.48445 9.20327 3.84596 1.921 5.17078 3.61078
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.18376 4.24043 0.826633 6.89242 3.02904

CAGE analysis