Hb_001638_100

Information

Type -
Description -
Location Contig1638: 109137-110508
Sequence    

Annotation

kegg
ID vvi:100257546
description probable protein S-acyltransferase 12
nr
ID XP_002263621.1
description PREDICTED: probable protein S-acyltransferase 12 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A0A0E0EB27
description Uncharacterized protein OS=Oryza meridionalis PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable protein s-acyltransferase 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001638_100 0.0 - - PREDICTED: probable protein S-acyltransferase 12 [Vitis vinifera]
2 Hb_040948_020 0.1506590675 - - -
3 Hb_004800_050 0.1863978204 - - PREDICTED: uncharacterized protein LOC105643859 [Jatropha curcas]
4 Hb_001501_040 0.2197693924 - - PREDICTED: uncharacterized protein LOC102663792 [Glycine max]
5 Hb_005348_130 0.2239634985 - - PREDICTED: pollen receptor-like kinase 3 [Jatropha curcas]
6 Hb_002345_080 0.2293574453 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_004607_100 0.2651413593 - - PREDICTED: uncharacterized protein LOC103445866 [Malus domestica]
8 Hb_005016_180 0.2706329525 - - phosphoglycerate kinase, putative [Ricinus communis]
9 Hb_000230_070 0.2786981287 - - Galactose oxidase precursor, putative [Ricinus communis]
10 Hb_003762_010 0.2891202766 - - -
11 Hb_003228_070 0.3210157641 - - conserved hypothetical protein [Ricinus communis]
12 Hb_143643_010 0.3246007271 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC103967596 [Pyrus x bretschneideri]
13 Hb_001031_060 0.329309217 - - PREDICTED: uncharacterized protein LOC103940329 [Pyrus x bretschneideri]
14 Hb_000680_040 0.3293339469 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
15 Hb_001433_060 0.3366940891 - - hypothetical protein JCGZ_23291 [Jatropha curcas]
16 Hb_001184_120 0.3372579585 - - hypothetical protein CICLE_v10025281mg [Citrus clementina]
17 Hb_001369_310 0.34092867 - - tonoplast intrinsic protein, putative [Ricinus communis]
18 Hb_148146_030 0.341444281 - - PREDICTED: uncharacterized protein LOC105649266 [Jatropha curcas]
19 Hb_000156_170 0.3452706112 - - PREDICTED: pentatricopeptide repeat-containing protein At3g14730 [Prunus mume]
20 Hb_000896_130 0.3512014028 transcription factor TF Family: CPP cysteine-rich polycomb-like family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_001638_100 Hb_001638_100 Hb_040948_020 Hb_040948_020 Hb_001638_100--Hb_040948_020 Hb_004800_050 Hb_004800_050 Hb_001638_100--Hb_004800_050 Hb_001501_040 Hb_001501_040 Hb_001638_100--Hb_001501_040 Hb_005348_130 Hb_005348_130 Hb_001638_100--Hb_005348_130 Hb_002345_080 Hb_002345_080 Hb_001638_100--Hb_002345_080 Hb_004607_100 Hb_004607_100 Hb_001638_100--Hb_004607_100 Hb_040948_020--Hb_002345_080 Hb_040948_020--Hb_004800_050 Hb_040948_020--Hb_001501_040 Hb_040948_020--Hb_004607_100 Hb_001369_310 Hb_001369_310 Hb_040948_020--Hb_001369_310 Hb_004800_050--Hb_002345_080 Hb_004800_050--Hb_004607_100 Hb_004800_050--Hb_001501_040 Hb_000123_100 Hb_000123_100 Hb_004800_050--Hb_000123_100 Hb_001031_060 Hb_001031_060 Hb_001501_040--Hb_001031_060 Hb_000510_220 Hb_000510_220 Hb_001501_040--Hb_000510_220 Hb_002426_010 Hb_002426_010 Hb_001501_040--Hb_002426_010 Hb_148146_030 Hb_148146_030 Hb_005348_130--Hb_148146_030 Hb_003762_010 Hb_003762_010 Hb_005348_130--Hb_003762_010 Hb_009554_020 Hb_009554_020 Hb_005348_130--Hb_009554_020 Hb_007970_030 Hb_007970_030 Hb_005348_130--Hb_007970_030 Hb_182291_020 Hb_182291_020 Hb_005348_130--Hb_182291_020 Hb_000116_340 Hb_000116_340 Hb_005348_130--Hb_000116_340 Hb_002345_080--Hb_004607_100 Hb_003228_070 Hb_003228_070 Hb_002345_080--Hb_003228_070 Hb_002345_080--Hb_001501_040 Hb_000230_070 Hb_000230_070 Hb_004607_100--Hb_000230_070 Hb_004607_100--Hb_003228_070 Hb_143643_010 Hb_143643_010 Hb_004607_100--Hb_143643_010 Hb_000111_220 Hb_000111_220 Hb_004607_100--Hb_000111_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0560942 0.15799 0 0.0655984 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis