Hb_001638_110

Information

Type -
Description -
Location Contig1638: 111659-112259
Sequence    

Annotation

kegg
ID rcu:RCOM_0131130
description hypothetical protein
nr
ID XP_002529973.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SVF4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0131130 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14992: 111737-111914
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001638_110 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_019229_020 0.073284125 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
3 Hb_000238_060 0.0966692486 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
4 Hb_005228_170 0.0977348601 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
5 Hb_002671_110 0.1015811015 - - PREDICTED: remorin-like [Jatropha curcas]
6 Hb_000852_050 0.101994861 - - hypothetical protein POPTR_0018s02450g [Populus trichocarpa]
7 Hb_000649_030 0.1031099921 - - scab resistance family protein [Populus trichocarpa]
8 Hb_002003_020 0.1075118741 - - PREDICTED: UDP-glycosyltransferase 74F1-like [Jatropha curcas]
9 Hb_000000_060 0.109491331 - - PREDICTED: wall-associated receptor kinase-like 14 [Jatropha curcas]
10 Hb_094637_010 0.1098376354 - - PREDICTED: uncharacterized protein LOC105642042 [Jatropha curcas]
11 Hb_000616_050 0.1120893395 - - PREDICTED: uncharacterized protein LOC105639906 [Jatropha curcas]
12 Hb_000237_150 0.11237037 - - Epoxide hydrolase 2 [Morus notabilis]
13 Hb_001405_100 0.1224129372 - - PREDICTED: lysM domain receptor-like kinase 4 [Jatropha curcas]
14 Hb_017866_020 0.1249628854 transcription factor TF Family: WRKY WRKY transcription factor 40 [Jatropha curcas]
15 Hb_001329_040 0.1276556374 - - hypothetical protein RCOM_1345340 [Ricinus communis]
16 Hb_000081_020 0.1300461991 - - PREDICTED: protein NRT1/ PTR FAMILY 1.1-like [Camelina sativa]
17 Hb_008140_060 0.1300663755 - - Cytochrome P450, putative [Theobroma cacao]
18 Hb_002007_140 0.1301994274 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER-like [Populus euphratica]
19 Hb_000487_140 0.130516429 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
20 Hb_012762_070 0.1333346063 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HOX3 [Jatropha curcas]

Gene co-expression network

sample Hb_001638_110 Hb_001638_110 Hb_019229_020 Hb_019229_020 Hb_001638_110--Hb_019229_020 Hb_000238_060 Hb_000238_060 Hb_001638_110--Hb_000238_060 Hb_005228_170 Hb_005228_170 Hb_001638_110--Hb_005228_170 Hb_002671_110 Hb_002671_110 Hb_001638_110--Hb_002671_110 Hb_000852_050 Hb_000852_050 Hb_001638_110--Hb_000852_050 Hb_000649_030 Hb_000649_030 Hb_001638_110--Hb_000649_030 Hb_000616_050 Hb_000616_050 Hb_019229_020--Hb_000616_050 Hb_001104_280 Hb_001104_280 Hb_019229_020--Hb_001104_280 Hb_019229_020--Hb_000649_030 Hb_000000_060 Hb_000000_060 Hb_019229_020--Hb_000000_060 Hb_000237_150 Hb_000237_150 Hb_019229_020--Hb_000237_150 Hb_001405_100 Hb_001405_100 Hb_000238_060--Hb_001405_100 Hb_000238_060--Hb_000237_150 Hb_000238_060--Hb_000852_050 Hb_000238_060--Hb_002671_110 Hb_000081_020 Hb_000081_020 Hb_000238_060--Hb_000081_020 Hb_000238_060--Hb_005228_170 Hb_002081_040 Hb_002081_040 Hb_005228_170--Hb_002081_040 Hb_005228_170--Hb_002671_110 Hb_005218_070 Hb_005218_070 Hb_005228_170--Hb_005218_070 Hb_000302_060 Hb_000302_060 Hb_005228_170--Hb_000302_060 Hb_161393_010 Hb_161393_010 Hb_005228_170--Hb_161393_010 Hb_002204_030 Hb_002204_030 Hb_005228_170--Hb_002204_030 Hb_002671_110--Hb_005218_070 Hb_002671_110--Hb_000237_150 Hb_002671_110--Hb_001405_100 Hb_002671_110--Hb_002081_040 Hb_000852_050--Hb_000237_150 Hb_002150_010 Hb_002150_010 Hb_000852_050--Hb_002150_010 Hb_002391_350 Hb_002391_350 Hb_000852_050--Hb_002391_350 Hb_000852_050--Hb_001405_100 Hb_000649_030--Hb_000237_150 Hb_022998_010 Hb_022998_010 Hb_000649_030--Hb_022998_010 Hb_000649_030--Hb_000238_060 Hb_000649_030--Hb_000616_050 Hb_111582_010 Hb_111582_010 Hb_000649_030--Hb_111582_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 8.97405 0.585612 5.42557 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 17.396 0.58636

CAGE analysis