Hb_001638_150

Information

Type -
Description -
Location Contig1638: 126985-128574
Sequence    

Annotation

kegg
ID rcu:RCOM_0131250
description acyltransferase, putative
nr
ID XP_002529975.1
description acyltransferase, putative [Ricinus communis]
swissprot
ID Q9MAM3
description 3-ketoacyl-CoA synthase 1 OS=Arabidopsis thaliana GN=KCS1 PE=2 SV=1
trembl
ID B9SVF6
description 3-ketoacyl-CoA synthase OS=Ricinus communis GN=RCOM_0131250 PE=3 SV=1
Gene Ontology
ID GO:0016020
description 3-ketoacyl- synthase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001638_150 0.0 - - acyltransferase, putative [Ricinus communis]
2 Hb_015001_030 0.0600677952 - - inosine-uridine preferring nucleoside hydrolase family protein [Populus trichocarpa]
3 Hb_014250_010 0.0911386787 - - PREDICTED: alpha-mannosidase-like isoform X2 [Populus euphratica]
4 Hb_001440_010 0.1062616463 - - PREDICTED: armadillo repeat-containing kinesin-like protein 1 [Populus euphratica]
5 Hb_000010_440 0.107689435 - - PREDICTED: peroxisome biogenesis factor 10-like [Jatropha curcas]
6 Hb_003092_020 0.1079197684 - - PREDICTED: heptahelical transmembrane protein 1 [Jatropha curcas]
7 Hb_003656_090 0.1105138977 - - PREDICTED: protein Brevis radix-like 4 [Jatropha curcas]
8 Hb_000365_430 0.1105912482 - - PREDICTED: BTB/POZ domain-containing protein At3g08570-like [Jatropha curcas]
9 Hb_002641_140 0.1109458087 - - protein phosphatase 2c, putative [Ricinus communis]
10 Hb_001141_160 0.1112553764 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
11 Hb_000834_220 0.1128632743 - - PREDICTED: uncharacterized protein LOC105637705 [Jatropha curcas]
12 Hb_021346_020 0.1128871363 - - hypothetical protein JCGZ_26746 [Jatropha curcas]
13 Hb_001345_020 0.1137652253 - - hypothetical protein POPTR_0007s10400g [Populus trichocarpa]
14 Hb_002301_370 0.114081991 - - hypothetical protein JCGZ_21454 [Jatropha curcas]
15 Hb_001157_190 0.1154281642 - - PREDICTED: protein YLS3 [Jatropha curcas]
16 Hb_005357_120 0.1158960553 transcription factor TF Family: MYB-related -
17 Hb_000411_020 0.1165881107 - - cytochrome P450, putative [Ricinus communis]
18 Hb_005766_010 0.1174490167 - - serine carboxypeptidase, putative [Ricinus communis]
19 Hb_001135_010 0.1182833664 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]
20 Hb_000941_010 0.1202474599 - - hypothetical protein RCOM_0504460 [Ricinus communis]

Gene co-expression network

sample Hb_001638_150 Hb_001638_150 Hb_015001_030 Hb_015001_030 Hb_001638_150--Hb_015001_030 Hb_014250_010 Hb_014250_010 Hb_001638_150--Hb_014250_010 Hb_001440_010 Hb_001440_010 Hb_001638_150--Hb_001440_010 Hb_000010_440 Hb_000010_440 Hb_001638_150--Hb_000010_440 Hb_003092_020 Hb_003092_020 Hb_001638_150--Hb_003092_020 Hb_003656_090 Hb_003656_090 Hb_001638_150--Hb_003656_090 Hb_015001_030--Hb_014250_010 Hb_021346_020 Hb_021346_020 Hb_015001_030--Hb_021346_020 Hb_001135_010 Hb_001135_010 Hb_015001_030--Hb_001135_010 Hb_093218_010 Hb_093218_010 Hb_015001_030--Hb_093218_010 Hb_015001_030--Hb_003656_090 Hb_000096_210 Hb_000096_210 Hb_014250_010--Hb_000096_210 Hb_009554_030 Hb_009554_030 Hb_014250_010--Hb_009554_030 Hb_005766_010 Hb_005766_010 Hb_014250_010--Hb_005766_010 Hb_000866_190 Hb_000866_190 Hb_014250_010--Hb_000866_190 Hb_000834_220 Hb_000834_220 Hb_001440_010--Hb_000834_220 Hb_001946_200 Hb_001946_200 Hb_001440_010--Hb_001946_200 Hb_000230_360 Hb_000230_360 Hb_001440_010--Hb_000230_360 Hb_001440_010--Hb_003656_090 Hb_001936_180 Hb_001936_180 Hb_001440_010--Hb_001936_180 Hb_022092_110 Hb_022092_110 Hb_001440_010--Hb_022092_110 Hb_000024_150 Hb_000024_150 Hb_000010_440--Hb_000024_150 Hb_000365_430 Hb_000365_430 Hb_000010_440--Hb_000365_430 Hb_000592_100 Hb_000592_100 Hb_000010_440--Hb_000592_100 Hb_008725_100 Hb_008725_100 Hb_000010_440--Hb_008725_100 Hb_000411_020 Hb_000411_020 Hb_000010_440--Hb_000411_020 Hb_026240_020 Hb_026240_020 Hb_003092_020--Hb_026240_020 Hb_003092_020--Hb_000365_430 Hb_004117_280 Hb_004117_280 Hb_003092_020--Hb_004117_280 Hb_142026_010 Hb_142026_010 Hb_003092_020--Hb_142026_010 Hb_000098_260 Hb_000098_260 Hb_003092_020--Hb_000098_260 Hb_003454_050 Hb_003454_050 Hb_003092_020--Hb_003454_050 Hb_008175_050 Hb_008175_050 Hb_003656_090--Hb_008175_050 Hb_003656_090--Hb_000834_220 Hb_001138_070 Hb_001138_070 Hb_003656_090--Hb_001138_070 Hb_001141_160 Hb_001141_160 Hb_003656_090--Hb_001141_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0703717 3.03419 7.86756 7.81156 0.0128531 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0292112 0.0689459 0 5.27069 3.37349

CAGE analysis