Hb_001638_170

Information

Type -
Description -
Location Contig1638: 130737-134040
Sequence    

Annotation

kegg
ID rcu:RCOM_0131370
description nucleolar phosphoprotein, putative
nr
ID KGN56382.1
description hypothetical protein Csa_3G118170 [Cucumis sativus]
swissprot
ID P31209
description Polyadenylate-binding protein, cytoplasmic and nuclear OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pab1 PE=1 SV=2
trembl
ID B9SVF8
description Nucleolar phosphoprotein, putative OS=Ricinus communis GN=RCOM_0131370 PE=4 SV=1
Gene Ontology
ID GO:0000166
description heterogeneous nuclear ribonucleoprotein r

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15000: 130647-134923 , PASA_asmbl_15001: 130887-131334 , PASA_asmbl_15002: 132861-134990 , PASA_asmbl_15004: 134774-134916
cDNA
(Sanger)
(ID:Location)		 046_G05.ab1: 132861-134990

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001638_170 0.0 - - hypothetical protein Csa_3G118170 [Cucumis sativus]
2 Hb_004032_150 0.0593239124 - - PREDICTED: chaperone protein dnaJ 10-like [Jatropha curcas]
3 Hb_005291_030 0.0598922421 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
4 Hb_001489_150 0.0643534133 - - PREDICTED: uncharacterized protein LOC105123623 isoform X2 [Populus euphratica]
5 Hb_000085_160 0.0668111585 - - hypothetical protein CICLE_v10009012mg [Citrus clementina]
6 Hb_110291_010 0.0668437552 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002835_080 0.0702789707 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic-like [Jatropha curcas]
8 Hb_000365_390 0.0704833898 - - PREDICTED: KH domain-containing protein At2g38610 [Jatropha curcas]
9 Hb_003525_010 0.0712208106 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X1 [Populus euphratica]
10 Hb_000092_170 0.0723084926 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
11 Hb_031284_040 0.0723655676 - - PREDICTED: pentatricopeptide repeat-containing protein At4g30700 [Jatropha curcas]
12 Hb_011037_030 0.0723961354 - - PREDICTED: uncharacterized protein LOC105641407 [Jatropha curcas]
13 Hb_000225_040 0.0724705103 - - PREDICTED: translation factor GUF1 homolog, mitochondrial [Nelumbo nucifera]
14 Hb_007416_280 0.0732419861 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000215_110 0.0734700941 - - PREDICTED: uncharacterized protein C3F10.06c isoform X1 [Jatropha curcas]
16 Hb_002045_240 0.0735801139 - - 2-methyl-6-phytylbenzoquinone methyltranferase [Hevea brasiliensis]
17 Hb_000521_120 0.0740977739 - - PREDICTED: cyclic pyranopterin monophosphate synthase, mitochondrial isoform X1 [Jatropha curcas]
18 Hb_000120_670 0.0742004953 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
19 Hb_002182_080 0.07441465 - - 3-5 exonuclease, putative [Ricinus communis]
20 Hb_019280_040 0.0749454178 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001638_170 Hb_001638_170 Hb_004032_150 Hb_004032_150 Hb_001638_170--Hb_004032_150 Hb_005291_030 Hb_005291_030 Hb_001638_170--Hb_005291_030 Hb_001489_150 Hb_001489_150 Hb_001638_170--Hb_001489_150 Hb_000085_160 Hb_000085_160 Hb_001638_170--Hb_000085_160 Hb_110291_010 Hb_110291_010 Hb_001638_170--Hb_110291_010 Hb_002835_080 Hb_002835_080 Hb_001638_170--Hb_002835_080 Hb_004767_100 Hb_004767_100 Hb_004032_150--Hb_004767_100 Hb_007416_280 Hb_007416_280 Hb_004032_150--Hb_007416_280 Hb_000318_290 Hb_000318_290 Hb_004032_150--Hb_000318_290 Hb_148644_010 Hb_148644_010 Hb_004032_150--Hb_148644_010 Hb_004032_150--Hb_001489_150 Hb_000030_190 Hb_000030_190 Hb_005291_030--Hb_000030_190 Hb_005291_030--Hb_001489_150 Hb_002271_020 Hb_002271_020 Hb_005291_030--Hb_002271_020 Hb_002303_070 Hb_002303_070 Hb_005291_030--Hb_002303_070 Hb_002473_130 Hb_002473_130 Hb_005291_030--Hb_002473_130 Hb_003952_070 Hb_003952_070 Hb_001489_150--Hb_003952_070 Hb_000808_270 Hb_000808_270 Hb_001489_150--Hb_000808_270 Hb_001489_150--Hb_007416_280 Hb_007317_110 Hb_007317_110 Hb_000085_160--Hb_007317_110 Hb_003525_010 Hb_003525_010 Hb_000085_160--Hb_003525_010 Hb_000011_200 Hb_000011_200 Hb_000085_160--Hb_000011_200 Hb_000630_050 Hb_000630_050 Hb_000085_160--Hb_000630_050 Hb_003665_060 Hb_003665_060 Hb_000085_160--Hb_003665_060 Hb_000010_330 Hb_000010_330 Hb_000085_160--Hb_000010_330 Hb_003878_070 Hb_003878_070 Hb_110291_010--Hb_003878_070 Hb_004143_060 Hb_004143_060 Hb_110291_010--Hb_004143_060 Hb_009218_010 Hb_009218_010 Hb_110291_010--Hb_009218_010 Hb_001014_160 Hb_001014_160 Hb_110291_010--Hb_001014_160 Hb_165928_020 Hb_165928_020 Hb_110291_010--Hb_165928_020 Hb_019280_040 Hb_019280_040 Hb_002835_080--Hb_019280_040 Hb_002835_080--Hb_148644_010 Hb_002182_080 Hb_002182_080 Hb_002835_080--Hb_002182_080 Hb_002835_080--Hb_000010_330 Hb_000959_260 Hb_000959_260 Hb_002835_080--Hb_000959_260 Hb_007691_030 Hb_007691_030 Hb_002835_080--Hb_007691_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.8642 17.8815 12.9679 20.4307 18.7772 38.7583
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.9743 26.4274 21.9522 22.3817 15.9337

CAGE analysis