Hb_001638_200

Information

Type transcription factor
Description TF Family: NAC
Location Contig1638: 155284-156861
Sequence    

Annotation

kegg
ID tcc:TCM_005047
description Transcription factor
nr
ID XP_012083111.1
description PREDICTED: NAC domain-containing protein 43 [Jatropha curcas]
swissprot
ID Q84WP6
description NAC domain-containing protein 43 OS=Arabidopsis thaliana GN=NAC043 PE=2 SV=2
trembl
ID R4N7K1
description NAC transcription factor 012 OS=Jatropha curcas GN=JCGZ_14193 PE=4 SV=1
Gene Ontology
ID GO:0005634
description transcription factor

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15007: 155405-156774
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001638_200 0.0 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 43 [Jatropha curcas]
2 Hb_002609_120 0.0593502938 - - hypothetical protein POPTR_0001s25660g [Populus trichocarpa]
3 Hb_004635_120 0.0621531689 - - PREDICTED: rho GTPase-activating protein 4-like [Jatropha curcas]
4 Hb_001439_080 0.064112186 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
5 Hb_000009_270 0.0671484837 - - Calmodulin, putative [Ricinus communis]
6 Hb_032920_020 0.0691495401 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
7 Hb_000156_110 0.0715293027 - - Uncharacterized protein TCM_029490 [Theobroma cacao]
8 Hb_017434_010 0.0725159571 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
9 Hb_001674_010 0.0764009462 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]
10 Hb_000000_390 0.0776405145 - - PREDICTED: uncharacterized protein LOC105633753 [Jatropha curcas]
11 Hb_001080_190 0.0778534197 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
12 Hb_009486_050 0.0836586326 - - PREDICTED: cyclin-U4-1 [Jatropha curcas]
13 Hb_001021_120 0.0843123071 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-4 [Jatropha curcas]
14 Hb_000538_090 0.0850397154 transcription factor TF Family: NAC hypothetical protein RCOM_1603380 [Ricinus communis]
15 Hb_000922_200 0.0879172104 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0012s08280g [Populus trichocarpa]
16 Hb_000722_030 0.0888396096 - - putative plant disease resistance family protein [Populus trichocarpa]
17 Hb_012395_240 0.0896421945 - - PREDICTED: uncharacterized protein LOC105638421 isoform X2 [Jatropha curcas]
18 Hb_002835_310 0.0911847719 - - ATP binding protein, putative [Ricinus communis]
19 Hb_007922_030 0.09201672 - - PREDICTED: uncharacterized protein LOC105111213 [Populus euphratica]
20 Hb_000058_180 0.0923162794 - - PREDICTED: protein ECERIFERUM 3 [Jatropha curcas]

Gene co-expression network

sample Hb_001638_200 Hb_001638_200 Hb_002609_120 Hb_002609_120 Hb_001638_200--Hb_002609_120 Hb_004635_120 Hb_004635_120 Hb_001638_200--Hb_004635_120 Hb_001439_080 Hb_001439_080 Hb_001638_200--Hb_001439_080 Hb_000009_270 Hb_000009_270 Hb_001638_200--Hb_000009_270 Hb_032920_020 Hb_032920_020 Hb_001638_200--Hb_032920_020 Hb_000156_110 Hb_000156_110 Hb_001638_200--Hb_000156_110 Hb_002609_120--Hb_000009_270 Hb_002609_120--Hb_032920_020 Hb_009486_050 Hb_009486_050 Hb_002609_120--Hb_009486_050 Hb_002609_120--Hb_000156_110 Hb_001021_120 Hb_001021_120 Hb_002609_120--Hb_001021_120 Hb_012395_240 Hb_012395_240 Hb_004635_120--Hb_012395_240 Hb_004635_120--Hb_000156_110 Hb_000538_090 Hb_000538_090 Hb_004635_120--Hb_000538_090 Hb_000000_390 Hb_000000_390 Hb_004635_120--Hb_000000_390 Hb_004635_120--Hb_032920_020 Hb_007617_010 Hb_007617_010 Hb_001439_080--Hb_007617_010 Hb_001080_190 Hb_001080_190 Hb_001439_080--Hb_001080_190 Hb_001439_080--Hb_009486_050 Hb_000722_030 Hb_000722_030 Hb_001439_080--Hb_000722_030 Hb_000017_200 Hb_000017_200 Hb_001439_080--Hb_000017_200 Hb_000009_270--Hb_001021_120 Hb_000009_270--Hb_032920_020 Hb_017434_010 Hb_017434_010 Hb_000009_270--Hb_017434_010 Hb_098315_060 Hb_098315_060 Hb_000009_270--Hb_098315_060 Hb_001674_010 Hb_001674_010 Hb_000009_270--Hb_001674_010 Hb_032920_020--Hb_001674_010 Hb_000028_190 Hb_000028_190 Hb_032920_020--Hb_000028_190 Hb_002150_090 Hb_002150_090 Hb_032920_020--Hb_002150_090 Hb_002835_310 Hb_002835_310 Hb_000156_110--Hb_002835_310 Hb_000156_110--Hb_032920_020 Hb_000156_110--Hb_000000_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0461457 1.04933 14.0008 11.2513 0.0288157 0.0314056
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.397133 9.94315

CAGE analysis