Hb_001638_210

Information

Type -
Description -
Location Contig1638: 173050-173652
Sequence    

Annotation

kegg
ID rcu:RCOM_1339570
description hypothetical protein
nr
ID XP_002515066.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RNJ5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1339570 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001638_210 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000249_090 0.1590638401 - - PREDICTED: triacylglycerol lipase SDP1 [Jatropha curcas]
3 Hb_006018_030 0.1724796259 - - PREDICTED: uncharacterized protein LOC105108875 isoform X1 [Populus euphratica]
4 Hb_001741_040 0.1857954402 rubber biosynthesis Gene Name: REF3 REF-like stress related protein 1 [Hevea brasiliensis]
5 Hb_000120_650 0.1866309036 - - PREDICTED: proton-coupled amino acid transporter 3 [Jatropha curcas]
6 Hb_075449_050 0.1924659237 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
7 Hb_048937_030 0.1934910902 - - hypothetical protein RCOM_0231790 [Ricinus communis]
8 Hb_154443_010 0.1976220488 - - PREDICTED: uncharacterized protein LOC105633410 [Jatropha curcas]
9 Hb_000972_010 0.2006014726 - - PREDICTED: kinesin KP1 [Jatropha curcas]
10 Hb_000157_040 0.2058626834 - - PREDICTED: cycloartenol-C-24-methyltransferase [Jatropha curcas]
11 Hb_007590_060 0.2139627832 - - -
12 Hb_027892_010 0.2151439549 transcription factor TF Family: bHLH LMYC1 [Hevea brasiliensis]
13 Hb_017124_020 0.2227190614 - - hypothetical protein PRUPE_ppa015539mg [Prunus persica]
14 Hb_003913_140 0.2245586069 - - PREDICTED: uncharacterized protein LOC105640324 [Jatropha curcas]
15 Hb_000103_110 0.225022639 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X1 [Jatropha curcas]
16 Hb_000270_410 0.2263035207 - - -
17 Hb_004048_050 0.2270438652 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Citrus sinensis]
18 Hb_000617_290 0.2290271424 - - conserved hypothetical protein [Ricinus communis]
19 Hb_033152_050 0.2305832701 - - hypothetical protein JCGZ_04890 [Jatropha curcas]
20 Hb_002000_110 0.2330732038 - - ASR-like protein 2 [Hevea brasiliensis]

Gene co-expression network

sample Hb_001638_210 Hb_001638_210 Hb_000249_090 Hb_000249_090 Hb_001638_210--Hb_000249_090 Hb_006018_030 Hb_006018_030 Hb_001638_210--Hb_006018_030 Hb_001741_040 Hb_001741_040 Hb_001638_210--Hb_001741_040 Hb_000120_650 Hb_000120_650 Hb_001638_210--Hb_000120_650 Hb_075449_050 Hb_075449_050 Hb_001638_210--Hb_075449_050 Hb_048937_030 Hb_048937_030 Hb_001638_210--Hb_048937_030 Hb_027892_010 Hb_027892_010 Hb_000249_090--Hb_027892_010 Hb_000249_090--Hb_000120_650 Hb_013818_060 Hb_013818_060 Hb_000249_090--Hb_013818_060 Hb_004705_030 Hb_004705_030 Hb_000249_090--Hb_004705_030 Hb_004048_050 Hb_004048_050 Hb_000249_090--Hb_004048_050 Hb_002685_090 Hb_002685_090 Hb_000249_090--Hb_002685_090 Hb_006018_030--Hb_075449_050 Hb_006018_030--Hb_048937_030 Hb_000107_070 Hb_000107_070 Hb_006018_030--Hb_000107_070 Hb_001391_020 Hb_001391_020 Hb_006018_030--Hb_001391_020 Hb_001671_060 Hb_001671_060 Hb_006018_030--Hb_001671_060 Hb_003913_140 Hb_003913_140 Hb_001741_040--Hb_003913_140 Hb_000227_200 Hb_000227_200 Hb_001741_040--Hb_000227_200 Hb_000103_110 Hb_000103_110 Hb_001741_040--Hb_000103_110 Hb_002450_070 Hb_002450_070 Hb_001741_040--Hb_002450_070 Hb_000972_010 Hb_000972_010 Hb_001741_040--Hb_000972_010 Hb_000120_650--Hb_027892_010 Hb_017124_020 Hb_017124_020 Hb_000120_650--Hb_017124_020 Hb_000120_650--Hb_002685_090 Hb_000120_650--Hb_013818_060 Hb_004871_050 Hb_004871_050 Hb_000120_650--Hb_004871_050 Hb_002000_110 Hb_002000_110 Hb_075449_050--Hb_002000_110 Hb_075449_050--Hb_000107_070 Hb_002235_230 Hb_002235_230 Hb_075449_050--Hb_002235_230 Hb_023214_010 Hb_023214_010 Hb_075449_050--Hb_023214_010 Hb_001741_090 Hb_001741_090 Hb_075449_050--Hb_001741_090 Hb_000742_270 Hb_000742_270 Hb_048937_030--Hb_000742_270 Hb_011671_400 Hb_011671_400 Hb_048937_030--Hb_011671_400 Hb_048937_030--Hb_000107_070 Hb_003020_310 Hb_003020_310 Hb_048937_030--Hb_003020_310 Hb_000175_610 Hb_000175_610 Hb_048937_030--Hb_000175_610
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.6115 0.323118 0 0.631734 0.666284 1.79365
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.6543 6.45937 35.2955 0.839666 0.305131

CAGE analysis