Hb_001638_250

Information

Type -
Description -
Location Contig1638: 188204-195746
Sequence    

Annotation

kegg
ID rcu:RCOM_1339630
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012083106.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g05600 [Jatropha curcas]
swissprot
ID Q9SYK1
description Pentatricopeptide repeat-containing protein At1g05600 OS=Arabidopsis thaliana GN=At1g05600 PE=2 SV=1
trembl
ID B9RNK1
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1339630 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15014: 188205-188908 , PASA_asmbl_15016: 189608-195719
cDNA
(Sanger)
(ID:Location)		 009_D15r.ab1: 196563-197382

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001638_250 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05600 [Jatropha curcas]
2 Hb_005977_090 0.0588382963 - - PREDICTED: F-box/kelch-repeat protein At1g16250 [Jatropha curcas]
3 Hb_028487_110 0.0662050576 - - PREDICTED: phosphoglucomutase, cytoplasmic [Jatropha curcas]
4 Hb_004934_090 0.080049324 - - hypothetical protein JCGZ_08073 [Jatropha curcas]
5 Hb_001680_010 0.0808104347 - - Serine/threonine protein kinase SAPK3 [Medicago truncatula]
6 Hb_000002_040 0.0819764722 - - hypothetical protein JCGZ_01511 [Jatropha curcas]
7 Hb_001541_020 0.0820092734 - - PREDICTED: uncharacterized protein At3g49055 [Jatropha curcas]
8 Hb_003052_150 0.0827263831 - - PREDICTED: putative ATP-dependent RNA helicase DHX33 [Jatropha curcas]
9 Hb_004724_060 0.0829400972 - - PREDICTED: uncharacterized protein LOC105640155 isoform X1 [Jatropha curcas]
10 Hb_002798_040 0.0832956071 transcription factor TF Family: MYB cell division control protein, putative [Ricinus communis]
11 Hb_010931_080 0.0844655554 - - PREDICTED: U4/U6.U5 tri-snRNP-associated protein 2-like [Jatropha curcas]
12 Hb_000803_300 0.085686306 - - nuclear movement protein nudc, putative [Ricinus communis]
13 Hb_005245_130 0.0859288423 - - PREDICTED: uncharacterized protein LOC105643730 [Jatropha curcas]
14 Hb_000522_090 0.0860028477 - - PREDICTED: actin-related protein 9 isoform X1 [Nicotiana tomentosiformis]
15 Hb_009411_010 0.0861153026 - - PREDICTED: uncharacterized protein LOC105645272 [Jatropha curcas]
16 Hb_003057_110 0.0869180402 - - PREDICTED: uncharacterized protein LOC105639179 [Jatropha curcas]
17 Hb_007586_030 0.0873640728 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like isoform X1 [Jatropha curcas]
18 Hb_001789_210 0.0881858544 - - PREDICTED: methyltransferase-like protein 1 isoform X2 [Jatropha curcas]
19 Hb_002030_030 0.0884342247 - - PREDICTED: GLABRA2 expression modulator [Jatropha curcas]
20 Hb_000244_250 0.0888582836 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001638_250 Hb_001638_250 Hb_005977_090 Hb_005977_090 Hb_001638_250--Hb_005977_090 Hb_028487_110 Hb_028487_110 Hb_001638_250--Hb_028487_110 Hb_004934_090 Hb_004934_090 Hb_001638_250--Hb_004934_090 Hb_001680_010 Hb_001680_010 Hb_001638_250--Hb_001680_010 Hb_000002_040 Hb_000002_040 Hb_001638_250--Hb_000002_040 Hb_001541_020 Hb_001541_020 Hb_001638_250--Hb_001541_020 Hb_005977_090--Hb_028487_110 Hb_001866_110 Hb_001866_110 Hb_005977_090--Hb_001866_110 Hb_007586_030 Hb_007586_030 Hb_005977_090--Hb_007586_030 Hb_000803_300 Hb_000803_300 Hb_005977_090--Hb_000803_300 Hb_000522_090 Hb_000522_090 Hb_005977_090--Hb_000522_090 Hb_009535_020 Hb_009535_020 Hb_028487_110--Hb_009535_020 Hb_000329_090 Hb_000329_090 Hb_028487_110--Hb_000329_090 Hb_000743_040 Hb_000743_040 Hb_028487_110--Hb_000743_040 Hb_000046_440 Hb_000046_440 Hb_028487_110--Hb_000046_440 Hb_002097_090 Hb_002097_090 Hb_004934_090--Hb_002097_090 Hb_004096_030 Hb_004096_030 Hb_004934_090--Hb_004096_030 Hb_005245_130 Hb_005245_130 Hb_004934_090--Hb_005245_130 Hb_002030_030 Hb_002030_030 Hb_004934_090--Hb_002030_030 Hb_004934_090--Hb_000803_300 Hb_003994_240 Hb_003994_240 Hb_004934_090--Hb_003994_240 Hb_005993_020 Hb_005993_020 Hb_001680_010--Hb_005993_020 Hb_005532_050 Hb_005532_050 Hb_001680_010--Hb_005532_050 Hb_002131_020 Hb_002131_020 Hb_001680_010--Hb_002131_020 Hb_001301_200 Hb_001301_200 Hb_001680_010--Hb_001301_200 Hb_002835_370 Hb_002835_370 Hb_001680_010--Hb_002835_370 Hb_001680_010--Hb_001541_020 Hb_002042_140 Hb_002042_140 Hb_000002_040--Hb_002042_140 Hb_000107_500 Hb_000107_500 Hb_000002_040--Hb_000107_500 Hb_000794_050 Hb_000794_050 Hb_000002_040--Hb_000794_050 Hb_003609_030 Hb_003609_030 Hb_000002_040--Hb_003609_030 Hb_000617_240 Hb_000617_240 Hb_000002_040--Hb_000617_240 Hb_000139_090 Hb_000139_090 Hb_000002_040--Hb_000139_090 Hb_022408_010 Hb_022408_010 Hb_001541_020--Hb_022408_010 Hb_001541_020--Hb_000107_500 Hb_002221_050 Hb_002221_050 Hb_001541_020--Hb_002221_050 Hb_000244_250 Hb_000244_250 Hb_001541_020--Hb_000244_250 Hb_004162_280 Hb_004162_280 Hb_001541_020--Hb_004162_280 Hb_002301_220 Hb_002301_220 Hb_001541_020--Hb_002301_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.1952 10.5376 5.5096 4.4411 18.1334 18.5236
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.3758 7.04768 12.0959 7.27592 9.3833

CAGE analysis