Hb_001638_260

Information

Type -
Description -
Location Contig1638: 196235-197355
Sequence    

Annotation

kegg
ID vvi:100249556
description 60S acidic ribosomal protein P1
nr
ID XP_002279082.1
description PREDICTED: 60S acidic ribosomal protein P1 [Vitis vinifera]
swissprot
ID Q8LEQ0
description 60S acidic ribosomal protein P1-3 OS=Arabidopsis thaliana GN=RPP1C PE=1 SV=2
trembl
ID D7TVT2
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0025g02780 PE=3 SV=1
Gene Ontology
ID GO:0022626
description 60s acidic ribosomal protein p1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15017: 195949-197384 , PASA_asmbl_15018: 195949-197384 , PASA_asmbl_15019: 195990-196091
cDNA
(Sanger)
(ID:Location)		 002_G22.ab1: 195950-197323 , 004_E08.ab1: 195950-197323 , 005_E18.ab1: 195950-197325 , 008_H09.ab1: 195949-196865 , 009_D15.ab1: 195949-196832 , 010_E10.ab1: 195945-197323 , 010_F10.ab1: 195950-197326 , 010_L14.ab1: 195950-197325 , 012_F11.ab1: 195945-197323 , 012_I03.ab1: 195945-197323 , 012_M01.ab1: 195945-197330 , 014_N08.ab1: 195949-197262 , 016_A24.ab1: 195950-197286 , 017_B04.ab1: 195950-196850 , 017_G04.ab1: 195949-196850 , 018_A02.ab1: 195949-196843 , 022_H17.ab1: 195950-197240 , 023_L23.ab1: 195950-196860 , 030_I11.ab1: 195950-197184 , 031_C17.ab1: 195949-197325 , 037_A20.ab1: 195950-197325 , 042_A13.ab1: 195945-197185 , 042_E15.ab1: 195950-197298 , 044_E14.ab1: 195950-197323 , 048_B14.ab1: 195950-197325 , 053_N13.ab1: 195950-197323

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001638_260 0.0 - - PREDICTED: 60S acidic ribosomal protein P1 [Vitis vinifera]
2 Hb_001269_270 0.0580888138 - - 60S ribosomal protein L27B [Hevea brasiliensis]
3 Hb_000283_110 0.0630025205 - - PREDICTED: probable prefoldin subunit 4 isoform X2 [Jatropha curcas]
4 Hb_009554_010 0.0647008232 - - PREDICTED: multifunctional methyltransferase subunit TRM112-like protein At1g22270 [Jatropha curcas]
5 Hb_000526_150 0.0685257461 - - hypothetical protein POPTR_0019s10790g, partial [Populus trichocarpa]
6 Hb_000545_150 0.069104882 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
7 Hb_001818_020 0.0719394281 - - PREDICTED: 60S ribosomal protein L21-1 [Phoenix dactylifera]
8 Hb_003226_210 0.0724944119 - - hypothetical protein PRUPE_ppa013414mg [Prunus persica]
9 Hb_002716_090 0.0740595351 - - U6 snRNA-associated Sm-like protein LSm8 [Hevea brasiliensis]
10 Hb_012573_070 0.074662202 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000617_090 0.0767733268 - - hypoia-responsive family protein 4 [Hevea brasiliensis]
12 Hb_032202_090 0.0775328714 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Jatropha curcas]
13 Hb_002518_050 0.0775916008 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Jatropha curcas]
14 Hb_005496_030 0.0778989763 - - PREDICTED: 40S ribosomal protein S29-like [Malus domestica]
15 Hb_000970_010 0.078824067 - - PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas]
16 Hb_000526_040 0.0808911335 - - 60S ribosomal protein L6, putative [Ricinus communis]
17 Hb_009851_100 0.0812041166 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Jatropha curcas]
18 Hb_003125_150 0.0815202716 - - PREDICTED: protein transport protein Sec61 subunit gamma [Jatropha curcas]
19 Hb_003641_020 0.0823152244 - - hypothetical protein POPTR_0006s13960g [Populus trichocarpa]
20 Hb_002713_070 0.083575575 - - hypothetical protein POPTR_0002s21620g [Populus trichocarpa]

Gene co-expression network

sample Hb_001638_260 Hb_001638_260 Hb_001269_270 Hb_001269_270 Hb_001638_260--Hb_001269_270 Hb_000283_110 Hb_000283_110 Hb_001638_260--Hb_000283_110 Hb_009554_010 Hb_009554_010 Hb_001638_260--Hb_009554_010 Hb_000526_150 Hb_000526_150 Hb_001638_260--Hb_000526_150 Hb_000545_150 Hb_000545_150 Hb_001638_260--Hb_000545_150 Hb_001818_020 Hb_001818_020 Hb_001638_260--Hb_001818_020 Hb_003125_150 Hb_003125_150 Hb_001269_270--Hb_003125_150 Hb_000617_090 Hb_000617_090 Hb_001269_270--Hb_000617_090 Hb_001045_080 Hb_001045_080 Hb_001269_270--Hb_001045_080 Hb_001269_270--Hb_000526_150 Hb_009851_100 Hb_009851_100 Hb_001269_270--Hb_009851_100 Hb_003226_210 Hb_003226_210 Hb_000283_110--Hb_003226_210 Hb_003893_050 Hb_003893_050 Hb_000283_110--Hb_003893_050 Hb_002431_050 Hb_002431_050 Hb_000283_110--Hb_002431_050 Hb_000029_200 Hb_000029_200 Hb_000283_110--Hb_000029_200 Hb_000441_190 Hb_000441_190 Hb_000283_110--Hb_000441_190 Hb_009793_010 Hb_009793_010 Hb_009554_010--Hb_009793_010 Hb_009554_010--Hb_003226_210 Hb_002713_070 Hb_002713_070 Hb_009554_010--Hb_002713_070 Hb_006816_530 Hb_006816_530 Hb_009554_010--Hb_006816_530 Hb_000086_550 Hb_000086_550 Hb_009554_010--Hb_000086_550 Hb_000526_150--Hb_009851_100 Hb_000526_150--Hb_000545_150 Hb_000634_050 Hb_000634_050 Hb_000526_150--Hb_000634_050 Hb_000526_150--Hb_001818_020 Hb_012573_070 Hb_012573_070 Hb_000545_150--Hb_012573_070 Hb_000545_150--Hb_001818_020 Hb_000465_060 Hb_000465_060 Hb_000545_150--Hb_000465_060 Hb_000317_340 Hb_000317_340 Hb_000545_150--Hb_000317_340 Hb_032202_090 Hb_032202_090 Hb_000545_150--Hb_032202_090 Hb_000970_010 Hb_000970_010 Hb_001818_020--Hb_000970_010 Hb_001584_070 Hb_001584_070 Hb_001818_020--Hb_001584_070 Hb_000025_600 Hb_000025_600 Hb_001818_020--Hb_000025_600 Hb_000007_100 Hb_000007_100 Hb_001818_020--Hb_000007_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
531.126 185.944 198.972 393.832 435.264 609.153
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
891.952 1605.55 500.25 252.821 139.549

CAGE analysis