Hb_001638_270

Information

Type -
Description -
Location Contig1638: 201935-212731
Sequence    

Annotation

kegg
ID rcu:RCOM_1339640
description hypothetical protein
nr
ID XP_012083104.1
description PREDICTED: vacuolar protein sorting-associated protein 8 homolog isoform X2 [Jatropha curcas]
swissprot
ID Q0P5W1
description Vacuolar protein sorting-associated protein 8 homolog OS=Mus musculus GN=Vps8 PE=2 SV=1
trembl
ID B9RNK2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1339640 PE=4 SV=1
Gene Ontology
ID GO:0005622
description vacuolar protein sorting-associated protein 8 homolog isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15021: 203229-204079 , PASA_asmbl_15023: 204825-205006 , PASA_asmbl_15024: 205063-205365 , PASA_asmbl_15026: 206426-206695 , PASA_asmbl_15027: 208574-212556
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001638_270 0.0 - - PREDICTED: vacuolar protein sorting-associated protein 8 homolog isoform X2 [Jatropha curcas]
2 Hb_167498_010 0.0587359413 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
3 Hb_003158_010 0.05931371 - - hypothetical protein JCGZ_17361 [Jatropha curcas]
4 Hb_000395_130 0.0621282601 - - PREDICTED: N6-adenosine-methyltransferase MT-A70-like [Jatropha curcas]
5 Hb_000003_190 0.0632539552 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA-like isoform X1 [Nelumbo nucifera]
6 Hb_000092_020 0.0668330267 transcription factor TF Family: MYB transcription factor, putative [Ricinus communis]
7 Hb_000574_540 0.0671347479 - - ATP binding protein, putative [Ricinus communis]
8 Hb_007254_070 0.068909932 - - PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X1 [Jatropha curcas]
9 Hb_000190_120 0.0708634227 - - PREDICTED: uncharacterized protein LOC105649936 [Jatropha curcas]
10 Hb_000035_290 0.0719572486 - - RNA recognition motif-containing family protein [Populus trichocarpa]
11 Hb_002872_040 0.0726008094 - - pumilio, putative [Ricinus communis]
12 Hb_027760_080 0.0726287162 - - cytochrome P450, putative [Ricinus communis]
13 Hb_001080_230 0.0744530989 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105649979 [Jatropha curcas]
14 Hb_004162_090 0.0745626631 transcription factor TF Family: MYB PREDICTED: transcription factor DIVARICATA [Jatropha curcas]
15 Hb_002890_290 0.0756009025 - - PREDICTED: outer envelope protein 64, mitochondrial [Jatropha curcas]
16 Hb_001114_140 0.0758938396 - - PREDICTED: uncharacterized protein LOC105631631 [Jatropha curcas]
17 Hb_000329_470 0.0769448002 - - ccr4-not transcription complex, putative [Ricinus communis]
18 Hb_001369_730 0.0769720053 - - F5O11.10, putative isoform 1 [Theobroma cacao]
19 Hb_005779_080 0.0792605173 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Jatropha curcas]
20 Hb_004800_080 0.0807092533 - - PREDICTED: acidic leucine-rich nuclear phosphoprotein 32-related protein [Jatropha curcas]

Gene co-expression network

sample Hb_001638_270 Hb_001638_270 Hb_167498_010 Hb_167498_010 Hb_001638_270--Hb_167498_010 Hb_003158_010 Hb_003158_010 Hb_001638_270--Hb_003158_010 Hb_000395_130 Hb_000395_130 Hb_001638_270--Hb_000395_130 Hb_000003_190 Hb_000003_190 Hb_001638_270--Hb_000003_190 Hb_000092_020 Hb_000092_020 Hb_001638_270--Hb_000092_020 Hb_000574_540 Hb_000574_540 Hb_001638_270--Hb_000574_540 Hb_001369_730 Hb_001369_730 Hb_167498_010--Hb_001369_730 Hb_167498_010--Hb_003158_010 Hb_001409_020 Hb_001409_020 Hb_167498_010--Hb_001409_020 Hb_000329_470 Hb_000329_470 Hb_167498_010--Hb_000329_470 Hb_000225_040 Hb_000225_040 Hb_167498_010--Hb_000225_040 Hb_007254_070 Hb_007254_070 Hb_167498_010--Hb_007254_070 Hb_003158_010--Hb_000329_470 Hb_003158_010--Hb_000225_040 Hb_002025_020 Hb_002025_020 Hb_003158_010--Hb_002025_020 Hb_000011_200 Hb_000011_200 Hb_003158_010--Hb_000011_200 Hb_000347_070 Hb_000347_070 Hb_003158_010--Hb_000347_070 Hb_000395_130--Hb_000092_020 Hb_001080_230 Hb_001080_230 Hb_000395_130--Hb_001080_230 Hb_000395_130--Hb_000003_190 Hb_000441_120 Hb_000441_120 Hb_000395_130--Hb_000441_120 Hb_006420_040 Hb_006420_040 Hb_000395_130--Hb_006420_040 Hb_012779_090 Hb_012779_090 Hb_000395_130--Hb_012779_090 Hb_000003_190--Hb_001080_230 Hb_000003_190--Hb_000092_020 Hb_003470_080 Hb_003470_080 Hb_000003_190--Hb_003470_080 Hb_002872_040 Hb_002872_040 Hb_000003_190--Hb_002872_040 Hb_008959_020 Hb_008959_020 Hb_000003_190--Hb_008959_020 Hb_000092_020--Hb_001080_230 Hb_003785_040 Hb_003785_040 Hb_000092_020--Hb_003785_040 Hb_000092_020--Hb_000574_540 Hb_011491_010 Hb_011491_010 Hb_000092_020--Hb_011491_010 Hb_000574_540--Hb_000003_190 Hb_000366_120 Hb_000366_120 Hb_000574_540--Hb_000366_120 Hb_000574_540--Hb_002872_040 Hb_000574_540--Hb_001080_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.43833 9.74233 4.13958 4.19014 9.7491 7.62125
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.99459 7.16387 5.9943 7.78019 6.70244

CAGE analysis