Hb_001638_310

Information

Type -
Description -
Location Contig1638: 225321-226685
Sequence    

Annotation

kegg
ID rcu:RCOM_1339680
description ribonucleoprotein, chloroplast, putative
nr
ID XP_002515076.1
description ribonucleoprotein, chloroplast, putative [Ricinus communis]
swissprot
ID P19684
description 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1
trembl
ID B9RNK5
description Ribonucleoprotein, chloroplast, putative OS=Ricinus communis GN=RCOM_1339680 PE=4 SV=1
Gene Ontology
ID GO:0005634
description 28 kda chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15034: 225338-226735 , PASA_asmbl_15035: 225356-226917
cDNA
(Sanger)
(ID:Location)		 014_I01.ab1: 225356-226495

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001638_310 0.0 - - ribonucleoprotein, chloroplast, putative [Ricinus communis]
2 Hb_003862_040 0.1082825419 - - Plastid-specific 30S ribosomal protein 1, chloroplast precursor, putative [Ricinus communis]
3 Hb_000574_470 0.1268188682 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X1 [Jatropha curcas]
4 Hb_001711_060 0.1270028657 - - PREDICTED: ferredoxin isoform X1 [Jatropha curcas]
5 Hb_000094_100 0.1285626446 - - PREDICTED: probable methyltransferase PMT28 [Jatropha curcas]
6 Hb_172632_060 0.1295430036 - - PREDICTED: uncharacterized protein LOC105646135 isoform X1 [Jatropha curcas]
7 Hb_000056_310 0.1305016555 - - PREDICTED: uncharacterized protein LOC105630433 [Jatropha curcas]
8 Hb_148146_010 0.1359149964 - - coproporphyrinogen III oxidase [Ziziphus jujuba]
9 Hb_140360_010 0.1387542146 - - PREDICTED: 50S ribosomal protein L11, chloroplastic-like [Populus euphratica]
10 Hb_006846_160 0.1393043661 - - electron transporter, putative [Ricinus communis]
11 Hb_005000_060 0.1452679039 - - PREDICTED: uncharacterized protein LOC105637867 [Jatropha curcas]
12 Hb_003992_050 0.1482313021 - - delta 9 desaturase, putative [Ricinus communis]
13 Hb_000035_210 0.1493698992 - - PREDICTED: BTB/POZ domain-containing protein NPY1 [Jatropha curcas]
14 Hb_003376_390 0.1504657001 - - PREDICTED: 29 kDa ribonucleoprotein A, chloroplastic [Jatropha curcas]
15 Hb_001959_060 0.151166339 - - PREDICTED: carboxyl-terminal-processing peptidase 2, chloroplastic [Jatropha curcas]
16 Hb_153553_040 0.1532742783 - - hypothetical protein JCGZ_19478 [Jatropha curcas]
17 Hb_004871_010 0.1544075036 - - RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
18 Hb_001953_100 0.1552523613 - - PREDICTED: glutamate-1-semialdehyde 2,1-aminomutase 2, chloroplastic [Jatropha curcas]
19 Hb_006252_030 0.1557040398 - - PREDICTED: uncharacterized protein LOC105638333 [Jatropha curcas]
20 Hb_001789_160 0.1562232593 - - PREDICTED: putative transporter arsB [Jatropha curcas]

Gene co-expression network

sample Hb_001638_310 Hb_001638_310 Hb_003862_040 Hb_003862_040 Hb_001638_310--Hb_003862_040 Hb_000574_470 Hb_000574_470 Hb_001638_310--Hb_000574_470 Hb_001711_060 Hb_001711_060 Hb_001638_310--Hb_001711_060 Hb_000094_100 Hb_000094_100 Hb_001638_310--Hb_000094_100 Hb_172632_060 Hb_172632_060 Hb_001638_310--Hb_172632_060 Hb_000056_310 Hb_000056_310 Hb_001638_310--Hb_000056_310 Hb_005000_060 Hb_005000_060 Hb_003862_040--Hb_005000_060 Hb_006846_160 Hb_006846_160 Hb_003862_040--Hb_006846_160 Hb_000031_100 Hb_000031_100 Hb_003862_040--Hb_000031_100 Hb_148146_010 Hb_148146_010 Hb_003862_040--Hb_148146_010 Hb_000934_260 Hb_000934_260 Hb_003862_040--Hb_000934_260 Hb_000574_470--Hb_172632_060 Hb_011476_030 Hb_011476_030 Hb_000574_470--Hb_011476_030 Hb_003376_390 Hb_003376_390 Hb_000574_470--Hb_003376_390 Hb_005618_080 Hb_005618_080 Hb_000574_470--Hb_005618_080 Hb_000212_250 Hb_000212_250 Hb_000574_470--Hb_000212_250 Hb_001959_060 Hb_001959_060 Hb_000574_470--Hb_001959_060 Hb_001386_090 Hb_001386_090 Hb_001711_060--Hb_001386_090 Hb_001519_170 Hb_001519_170 Hb_001711_060--Hb_001519_170 Hb_003397_030 Hb_003397_030 Hb_001711_060--Hb_003397_030 Hb_012653_030 Hb_012653_030 Hb_001711_060--Hb_012653_030 Hb_000146_030 Hb_000146_030 Hb_001711_060--Hb_000146_030 Hb_000438_130 Hb_000438_130 Hb_001711_060--Hb_000438_130 Hb_001789_160 Hb_001789_160 Hb_000094_100--Hb_001789_160 Hb_012779_080 Hb_012779_080 Hb_000094_100--Hb_012779_080 Hb_002915_010 Hb_002915_010 Hb_000094_100--Hb_002915_010 Hb_005665_090 Hb_005665_090 Hb_000094_100--Hb_005665_090 Hb_010620_050 Hb_010620_050 Hb_000094_100--Hb_010620_050 Hb_138585_030 Hb_138585_030 Hb_000094_100--Hb_138585_030 Hb_172632_060--Hb_003376_390 Hb_172632_060--Hb_001959_060 Hb_172632_060--Hb_005618_080 Hb_004871_010 Hb_004871_010 Hb_172632_060--Hb_004871_010 Hb_004117_040 Hb_004117_040 Hb_172632_060--Hb_004117_040 Hb_000056_310--Hb_148146_010 Hb_006252_030 Hb_006252_030 Hb_000056_310--Hb_006252_030 Hb_000056_310--Hb_005618_080 Hb_000009_020 Hb_000009_020 Hb_000056_310--Hb_000009_020 Hb_001953_100 Hb_001953_100 Hb_000056_310--Hb_001953_100 Hb_000749_200 Hb_000749_200 Hb_000056_310--Hb_000749_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.21748 11.5189 63.7162 11.3734 14.7372 5.41165
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.21406 7.58786 8.84957 4.50789 44.4616

CAGE analysis