Hb_001638_330

Information

Type transcription factor
Description TF Family: Pseudo ARR-B
Location Contig1638: 249215-257494
Sequence    

Annotation

kegg
ID rcu:RCOM_1339810
description sensory transduction histidine kinase, putative
nr
ID XP_012083098.1
description PREDICTED: two-component response regulator-like APRR3 isoform X1 [Jatropha curcas]
swissprot
ID Q6LA42
description Two-component response regulator-like APRR5 OS=Arabidopsis thaliana GN=APRR5 PE=1 SV=2
trembl
ID A0A067K9B9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14180 PE=4 SV=1
Gene Ontology
ID GO:0005622
description two-component response regulator-like aprr9 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15036: 249275-257462
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001638_330 0.0 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR3 isoform X1 [Jatropha curcas]
2 Hb_008173_150 0.1002591473 - - PREDICTED: uncharacterized protein LOC105645812 [Jatropha curcas]
3 Hb_000673_010 0.1119643289 - - PREDICTED: uncharacterized protein LOC105636554 isoform X1 [Jatropha curcas]
4 Hb_102948_010 0.1148111956 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
5 Hb_001430_020 0.1179318164 - - Actin-like ATPase superfamily protein isoform 1 [Theobroma cacao]
6 Hb_003408_060 0.1204530829 transcription factor TF Family: Orphans Salt-tolerance protein, putative [Ricinus communis]
7 Hb_000555_020 0.121268332 - - APO protein 2, chloroplast precursor, putative [Ricinus communis]
8 Hb_022378_010 0.12251243 - - PREDICTED: uncharacterized protein LOC105634715 isoform X1 [Jatropha curcas]
9 Hb_000069_610 0.1247887665 - - PREDICTED: protein SUPPRESSOR OF PHYA-105 1 [Jatropha curcas]
10 Hb_001766_070 0.1262559544 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000806_030 0.1276813196 transcription factor TF Family: C2H2 PREDICTED: probable lysine-specific demethylase ELF6 [Jatropha curcas]
12 Hb_007576_070 0.1285428015 - - PREDICTED: uncharacterized protein LOC105640040 isoform X3 [Jatropha curcas]
13 Hb_000107_340 0.1293336003 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105637652 [Jatropha curcas]
14 Hb_001279_040 0.1302664437 - - PREDICTED: probable carboxylesterase 11 [Jatropha curcas]
15 Hb_000270_600 0.1315846071 - - PREDICTED: uncharacterized protein LOC105640430 isoform X1 [Jatropha curcas]
16 Hb_111552_010 0.1327585863 - - PREDICTED: ATP sulfurylase 2 [Jatropha curcas]
17 Hb_012286_020 0.1327695618 - - PREDICTED: uncharacterized protein LOC105648960 [Jatropha curcas]
18 Hb_001160_100 0.1335367761 - - PREDICTED: probable plastid-lipid-associated protein 6, chloroplastic [Jatropha curcas]
19 Hb_006275_020 0.1346714027 - - PREDICTED: VIN3-like protein 2 [Jatropha curcas]
20 Hb_001178_030 0.1347923737 - - PREDICTED: 1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001638_330 Hb_001638_330 Hb_008173_150 Hb_008173_150 Hb_001638_330--Hb_008173_150 Hb_000673_010 Hb_000673_010 Hb_001638_330--Hb_000673_010 Hb_102948_010 Hb_102948_010 Hb_001638_330--Hb_102948_010 Hb_001430_020 Hb_001430_020 Hb_001638_330--Hb_001430_020 Hb_003408_060 Hb_003408_060 Hb_001638_330--Hb_003408_060 Hb_000555_020 Hb_000555_020 Hb_001638_330--Hb_000555_020 Hb_002435_100 Hb_002435_100 Hb_008173_150--Hb_002435_100 Hb_008173_150--Hb_000673_010 Hb_001160_100 Hb_001160_100 Hb_008173_150--Hb_001160_100 Hb_026048_110 Hb_026048_110 Hb_008173_150--Hb_026048_110 Hb_001409_060 Hb_001409_060 Hb_008173_150--Hb_001409_060 Hb_001766_070 Hb_001766_070 Hb_000673_010--Hb_001766_070 Hb_008120_040 Hb_008120_040 Hb_000673_010--Hb_008120_040 Hb_005235_070 Hb_005235_070 Hb_000673_010--Hb_005235_070 Hb_000137_010 Hb_000137_010 Hb_000673_010--Hb_000137_010 Hb_000603_190 Hb_000603_190 Hb_000673_010--Hb_000603_190 Hb_000673_010--Hb_001409_060 Hb_002218_020 Hb_002218_020 Hb_102948_010--Hb_002218_020 Hb_102948_010--Hb_001430_020 Hb_087313_010 Hb_087313_010 Hb_102948_010--Hb_087313_010 Hb_102948_010--Hb_005235_070 Hb_012438_030 Hb_012438_030 Hb_102948_010--Hb_012438_030 Hb_102948_010--Hb_000555_020 Hb_001430_020--Hb_002218_020 Hb_000802_130 Hb_000802_130 Hb_001430_020--Hb_000802_130 Hb_003883_010 Hb_003883_010 Hb_001430_020--Hb_003883_010 Hb_001430_020--Hb_005235_070 Hb_001430_020--Hb_000555_020 Hb_111552_010 Hb_111552_010 Hb_003408_060--Hb_111552_010 Hb_003687_130 Hb_003687_130 Hb_003408_060--Hb_003687_130 Hb_003408_060--Hb_001766_070 Hb_088584_010 Hb_088584_010 Hb_003408_060--Hb_088584_010 Hb_003177_070 Hb_003177_070 Hb_003408_060--Hb_003177_070 Hb_012799_050 Hb_012799_050 Hb_003408_060--Hb_012799_050 Hb_000107_340 Hb_000107_340 Hb_000555_020--Hb_000107_340 Hb_000555_020--Hb_005235_070 Hb_002150_140 Hb_002150_140 Hb_000555_020--Hb_002150_140 Hb_114310_070 Hb_114310_070 Hb_000555_020--Hb_114310_070 Hb_000311_120 Hb_000311_120 Hb_000555_020--Hb_000311_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.7941 72.685 85.265 43.587 22.5307 34.3958
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.6982 27.0198 48.58 10.5949 93.9351

CAGE analysis