Hb_001642_020

Information

Type -
Description -
Location Contig1642: 6033-9508
Sequence    

Annotation

kegg
ID rcu:RCOM_0009530
description alcohol dehydrogenase, putative (EC:1.1.1.255)
nr
ID XP_012075299.1
description PREDICTED: probable cinnamyl alcohol dehydrogenase 9 [Jatropha curcas]
swissprot
ID P42734
description Probable cinnamyl alcohol dehydrogenase 9 OS=Arabidopsis thaliana GN=CAD9 PE=2 SV=2
trembl
ID A0A067KK00
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09467 PE=3 SV=1
Gene Ontology
ID GO:0008270
description probable cinnamyl alcohol dehydrogenase 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15093: 6082-9488 , PASA_asmbl_15094: 7033-7230 , PASA_asmbl_15095: 7937-8333
cDNA
(Sanger)
(ID:Location)		 049_O15.ab1: 7586-9488

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001642_020 0.0 - - PREDICTED: probable cinnamyl alcohol dehydrogenase 9 [Jatropha curcas]
2 Hb_016734_100 0.0361573677 - - -
3 Hb_001031_140 0.0374915863 - - PREDICTED: GDSL esterase/lipase At5g33370-like [Jatropha curcas]
4 Hb_001426_020 0.0417921634 - - hypothetical protein CICLE_v10033594mg, partial [Citrus clementina]
5 Hb_000487_080 0.0444502179 - - PREDICTED: probable potassium transporter 13 [Jatropha curcas]
6 Hb_001141_180 0.0614655212 - - non-specific lipid-transfer protein-like protein At2g13820 precursor [Jatropha curcas]
7 Hb_001652_100 0.0673051712 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
8 Hb_002043_020 0.0679006255 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH87 [Jatropha curcas]
9 Hb_007120_120 0.0697476285 - - protein binding protein, putative [Ricinus communis]
10 Hb_008147_020 0.070222634 - - hypothetical protein JCGZ_25652 [Jatropha curcas]
11 Hb_009663_020 0.074445719 - - -
12 Hb_012035_010 0.0758019826 - - hypothetical protein JCGZ_21143 [Jatropha curcas]
13 Hb_001728_070 0.0760080673 - - PREDICTED: probable glycosyltransferase At3g07620 [Jatropha curcas]
14 Hb_001206_110 0.0762823006 - - PREDICTED: GDSL esterase/lipase At5g45910 [Jatropha curcas]
15 Hb_163566_010 0.076845677 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic isoform X2 [Amborella trichopoda]
16 Hb_000058_180 0.0772484317 - - PREDICTED: protein ECERIFERUM 3 [Jatropha curcas]
17 Hb_004735_030 0.084184244 - - PREDICTED: cytochrome P450 734A1 [Jatropha curcas]
18 Hb_002078_330 0.0848584858 - - lipid binding protein, putative [Ricinus communis]
19 Hb_004880_020 0.0848646874 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 [Jatropha curcas]
20 Hb_000777_080 0.0854150161 - - hypothetical protein POPTR_0015s15410g [Populus trichocarpa]

Gene co-expression network

sample Hb_001642_020 Hb_001642_020 Hb_016734_100 Hb_016734_100 Hb_001642_020--Hb_016734_100 Hb_001031_140 Hb_001031_140 Hb_001642_020--Hb_001031_140 Hb_001426_020 Hb_001426_020 Hb_001642_020--Hb_001426_020 Hb_000487_080 Hb_000487_080 Hb_001642_020--Hb_000487_080 Hb_001141_180 Hb_001141_180 Hb_001642_020--Hb_001141_180 Hb_001652_100 Hb_001652_100 Hb_001642_020--Hb_001652_100 Hb_016734_100--Hb_001426_020 Hb_016734_100--Hb_000487_080 Hb_016734_100--Hb_001031_140 Hb_007120_120 Hb_007120_120 Hb_016734_100--Hb_007120_120 Hb_009663_020 Hb_009663_020 Hb_016734_100--Hb_009663_020 Hb_001031_140--Hb_001141_180 Hb_001728_070 Hb_001728_070 Hb_001031_140--Hb_001728_070 Hb_001206_110 Hb_001206_110 Hb_001031_140--Hb_001206_110 Hb_002043_020 Hb_002043_020 Hb_001031_140--Hb_002043_020 Hb_001426_020--Hb_000487_080 Hb_001426_020--Hb_001031_140 Hb_163566_010 Hb_163566_010 Hb_001426_020--Hb_163566_010 Hb_005833_010 Hb_005833_010 Hb_001426_020--Hb_005833_010 Hb_000487_080--Hb_001031_140 Hb_012035_010 Hb_012035_010 Hb_000487_080--Hb_012035_010 Hb_000487_080--Hb_163566_010 Hb_004735_030 Hb_004735_030 Hb_001141_180--Hb_004735_030 Hb_001141_180--Hb_001728_070 Hb_000777_080 Hb_000777_080 Hb_001141_180--Hb_000777_080 Hb_001141_180--Hb_001206_110 Hb_013394_070 Hb_013394_070 Hb_001141_180--Hb_013394_070 Hb_008021_060 Hb_008021_060 Hb_001652_100--Hb_008021_060 Hb_001652_100--Hb_007120_120 Hb_007922_030 Hb_007922_030 Hb_001652_100--Hb_007922_030 Hb_000058_180 Hb_000058_180 Hb_001652_100--Hb_000058_180 Hb_001652_100--Hb_009663_020 Hb_001652_100--Hb_016734_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.05446 0.189451 87.1287 65.2087 0.0127506 0.223338
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0194776 73.3212

CAGE analysis