Hb_001645_020

Information

Type -
Description -
Location Contig1645: 4596-5852
Sequence    

Annotation

kegg
ID mtr:MTR_6g042200
description NAD(P)H-quinone oxidoreductase subunit H
nr
ID KEH17689.1
description NAD(P)H-quinone oxidoreductase subunit H [Medicago truncatula]
swissprot
ID A4GYX1
description NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Populus trichocarpa GN=ndhA PE=3 SV=1
trembl
ID A0A072TJG4
description NAD(P)H-quinone oxidoreductase subunit H OS=Medicago truncatula GN=MTR_0002s0150 PE=4 SV=1
Gene Ontology
ID GO:0005886
description nadh-plastoquinone oxidoreductase subunit partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001645_020 0.0 - - NAD(P)H-quinone oxidoreductase subunit H [Medicago truncatula]
2 Hb_182972_020 0.0733750755 - - cytochrome b6 [Gossypium barbadense]
3 Hb_000627_200 0.0860832581 - - NADH dehydrogenase subunit I [Hevea brasiliensis]
4 Hb_007645_060 0.1047084793 - - cytochrome f [Hevea brasiliensis]
5 Hb_031194_010 0.1179442281 - - NADH-plastoquinone oxidoreductase subunit 2 (chloroplast) [Arachis hypogaea]
6 Hb_003693_030 0.1224225904 - - NADH dehydrogenase subunit 7 [Hevea brasiliensis]
7 Hb_004811_010 0.124995902 - - DNA-directed RNA polymerase subunit beta, partial [Medicago truncatula]
8 Hb_019253_040 0.1262499055 - - conserved hypothetical protein [Ricinus communis]
9 Hb_088080_040 0.1267790255 - - NAD(P)H-quinone oxidoreductase subunit 2 A [Medicago truncatula]
10 Hb_051924_010 0.1272055473 - - BnaA01g34100D [Brassica napus]
11 Hb_001338_170 0.1289360965 - - NADH dehydrogenase subunit 4 [Hevea brasiliensis]
12 Hb_149598_010 0.1292254457 - - NAD(P)H-quinone oxidoreductase subunit 6 [Medicago truncatula]
13 Hb_179142_010 0.1328773876 - - NADH dehydrogenase ND 2 subunit [Nicotiana tomentosiformis]
14 Hb_145745_030 0.1339987161 - - BnaC09g26890D [Brassica napus]
15 Hb_003693_040 0.1365694303 - - NADH dehydrogenase subunit 1 [Hevea brasiliensis]
16 Hb_151890_020 0.137062285 - - photosystem II cp47 protein, partial (chloroplast) [Pentaphragma sp. Duangjai 49]
17 Hb_000648_150 0.1370864934 - - PREDICTED: putative L-type lectin-domain containing receptor kinase V.1 [Camelina sativa]
18 Hb_007645_050 0.1378545647 - - acetyl-CoA carboxylase beta subunit [Hevea brasiliensis]
19 Hb_003963_030 0.1450860371 - - psbB [Jatropha curcas]
20 Hb_115031_010 0.147906462 - - photosystem II P680 chlorophyll A apoprotein, partial (chloroplast) [Oenothera grandiflora]

Gene co-expression network

sample Hb_001645_020 Hb_001645_020 Hb_182972_020 Hb_182972_020 Hb_001645_020--Hb_182972_020 Hb_000627_200 Hb_000627_200 Hb_001645_020--Hb_000627_200 Hb_007645_060 Hb_007645_060 Hb_001645_020--Hb_007645_060 Hb_031194_010 Hb_031194_010 Hb_001645_020--Hb_031194_010 Hb_003693_030 Hb_003693_030 Hb_001645_020--Hb_003693_030 Hb_004811_010 Hb_004811_010 Hb_001645_020--Hb_004811_010 Hb_182972_020--Hb_000627_200 Hb_182972_020--Hb_007645_060 Hb_151890_020 Hb_151890_020 Hb_182972_020--Hb_151890_020 Hb_051924_010 Hb_051924_010 Hb_182972_020--Hb_051924_010 Hb_007645_050 Hb_007645_050 Hb_182972_020--Hb_007645_050 Hb_000627_200--Hb_007645_060 Hb_001338_170 Hb_001338_170 Hb_000627_200--Hb_001338_170 Hb_000627_200--Hb_051924_010 Hb_000627_200--Hb_003693_030 Hb_007645_060--Hb_007645_050 Hb_149598_010 Hb_149598_010 Hb_007645_060--Hb_149598_010 Hb_003963_030 Hb_003963_030 Hb_007645_060--Hb_003963_030 Hb_007645_060--Hb_001338_170 Hb_088080_040 Hb_088080_040 Hb_031194_010--Hb_088080_040 Hb_003693_060 Hb_003693_060 Hb_031194_010--Hb_003693_060 Hb_031194_010--Hb_004811_010 Hb_000156_240 Hb_000156_240 Hb_031194_010--Hb_000156_240 Hb_031194_010--Hb_007645_060 Hb_031194_010--Hb_001338_170 Hb_003693_030--Hb_051924_010 Hb_003693_030--Hb_182972_020 Hb_001338_150 Hb_001338_150 Hb_003693_030--Hb_001338_150 Hb_001338_080 Hb_001338_080 Hb_003693_030--Hb_001338_080 Hb_004811_010--Hb_007645_060 Hb_004811_010--Hb_088080_040 Hb_006040_090 Hb_006040_090 Hb_004811_010--Hb_006040_090 Hb_004811_010--Hb_149598_010 Hb_004811_010--Hb_151890_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0520859 0 0.333766 0.0828262 0.103172 0.204094
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0375218 0 0 6.39272

CAGE analysis