Hb_001645_030

Information

Type -
Description -
Location Contig1645: 8397-12255
Sequence    

Annotation

kegg
ID pop:POPTR_0006s03540g
description POPTRDRAFT_560374; putative auxin efflux carrier protein 10
nr
ID XP_012083907.1
description PREDICTED: probable auxin efflux carrier component 1b [Jatropha curcas]
swissprot
ID Q5SMQ9
description Auxin efflux carrier component 1 OS=Oryza sativa subsp. japonica GN=PIN1 PE=2 SV=1
trembl
ID A0A067JVX3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19719 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable auxin efflux carrier component 1b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15117: 8557-9135 , PASA_asmbl_15118: 9274-9636 , PASA_asmbl_15119: 9715-12078
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001645_030 0.0 - - PREDICTED: probable auxin efflux carrier component 1b [Jatropha curcas]
2 Hb_002304_100 0.066547321 - - hypothetical protein JCGZ_21524 [Jatropha curcas]
3 Hb_000243_340 0.0707610973 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
4 Hb_024868_010 0.0820221851 - - protein kinase, putative [Ricinus communis]
5 Hb_000834_130 0.0935021389 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002601_040 0.0980742237 - - hypothetical protein JCGZ_06197 [Jatropha curcas]
7 Hb_000568_020 0.1028206326 - - PREDICTED: probable aquaporin PIP2-5 [Jatropha curcas]
8 Hb_005000_280 0.1038198589 - - PREDICTED: uncharacterized protein LOC105637905 [Jatropha curcas]
9 Hb_027400_020 0.1059071403 - - PREDICTED: uncharacterized protein At5g22580 isoform X2 [Jatropha curcas]
10 Hb_189208_050 0.1062051208 - - PREDICTED: uncharacterized protein LOC105642694 isoform X2 [Jatropha curcas]
11 Hb_002518_020 0.1075163929 - - PREDICTED: uncharacterized protein LOC105631164 [Jatropha curcas]
12 Hb_001247_090 0.1078940788 - - PREDICTED: uncharacterized protein LOC105647395 [Jatropha curcas]
13 Hb_004031_050 0.1083670668 - - sinapyl alcohol dehydrogenase-like protein [Populus tremula x Populus tremuloides]
14 Hb_003216_140 0.1096306345 - - F-box protein SNE, putative [Ricinus communis]
15 Hb_001769_070 0.1127682262 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM1-like isoform X1 [Jatropha curcas]
16 Hb_009838_120 0.1147733494 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA13 isoform X1 [Jatropha curcas]
17 Hb_000076_280 0.1221921048 - - PREDICTED: pectinesterase-like [Populus euphratica]
18 Hb_005214_050 0.1223576092 - - PREDICTED: leucine-rich repeat receptor protein kinase MSP1-like [Jatropha curcas]
19 Hb_029142_040 0.1268730964 - - replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis]
20 Hb_008021_040 0.1286245559 - - PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Jatropha curcas]

Gene co-expression network

sample Hb_001645_030 Hb_001645_030 Hb_002304_100 Hb_002304_100 Hb_001645_030--Hb_002304_100 Hb_000243_340 Hb_000243_340 Hb_001645_030--Hb_000243_340 Hb_024868_010 Hb_024868_010 Hb_001645_030--Hb_024868_010 Hb_000834_130 Hb_000834_130 Hb_001645_030--Hb_000834_130 Hb_002601_040 Hb_002601_040 Hb_001645_030--Hb_002601_040 Hb_000568_020 Hb_000568_020 Hb_001645_030--Hb_000568_020 Hb_002304_100--Hb_000243_340 Hb_002304_100--Hb_000568_020 Hb_001247_090 Hb_001247_090 Hb_002304_100--Hb_001247_090 Hb_000339_050 Hb_000339_050 Hb_002304_100--Hb_000339_050 Hb_002304_100--Hb_002601_040 Hb_000243_340--Hb_002601_040 Hb_000243_340--Hb_000568_020 Hb_000243_340--Hb_000834_130 Hb_000243_340--Hb_000339_050 Hb_009838_120 Hb_009838_120 Hb_024868_010--Hb_009838_120 Hb_189208_050 Hb_189208_050 Hb_024868_010--Hb_189208_050 Hb_000631_100 Hb_000631_100 Hb_024868_010--Hb_000631_100 Hb_009627_020 Hb_009627_020 Hb_024868_010--Hb_009627_020 Hb_003216_140 Hb_003216_140 Hb_024868_010--Hb_003216_140 Hb_000834_130--Hb_000568_020 Hb_000419_140 Hb_000419_140 Hb_000834_130--Hb_000419_140 Hb_000076_280 Hb_000076_280 Hb_000834_130--Hb_000076_280 Hb_000834_130--Hb_002304_100 Hb_002601_040--Hb_000339_050 Hb_000805_270 Hb_000805_270 Hb_002601_040--Hb_000805_270 Hb_000086_510 Hb_000086_510 Hb_002601_040--Hb_000086_510 Hb_000568_020--Hb_001247_090 Hb_005214_050 Hb_005214_050 Hb_000568_020--Hb_005214_050 Hb_004031_050 Hb_004031_050 Hb_000568_020--Hb_004031_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.122884 2.42415 4.30043 15.0192 0.0484356 0.00677913
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0328943 0 0 4.42813 1.57036

CAGE analysis