Hb_001645_100

Information

Type -
Description -
Location Contig1645: 131825-133532
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001645_100 0.0 - - -
2 Hb_000501_090 0.0405168494 - - -
3 Hb_015026_010 0.0957854067 - - -
4 Hb_000146_100 0.0984594566 - - conserved hypothetical protein [Ricinus communis]
5 Hb_050229_030 0.1123915777 - - unnamed protein product [Coffea canephora]
6 Hb_000334_040 0.1179496675 - - hypothetical protein POPTR_0001s41860g [Populus trichocarpa]
7 Hb_009466_040 0.1189912747 - - hypothetical protein POPTR_0002s10890g [Populus trichocarpa]
8 Hb_008385_010 0.1226452623 - - sulfate transporter, putative [Ricinus communis]
9 Hb_066350_010 0.1233372136 - - somatic embryogenesis receptor-like kinase 4, partial [Rosa hybrid cultivar]
10 Hb_002267_040 0.1249066067 - - -
11 Hb_062226_080 0.1308979214 - - -
12 Hb_002053_070 0.1341888298 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 14 [Populus euphratica]
13 Hb_005888_040 0.1385090882 - - PREDICTED: gibberellin 20 oxidase 2 [Jatropha curcas]
14 Hb_000976_090 0.1439077905 - - -
15 Hb_177587_010 0.1443895154 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
16 Hb_003582_010 0.1507261273 - - hypothetical protein EUGRSUZ_B026451, partial [Eucalyptus grandis]
17 Hb_000840_220 0.1621997745 - - PREDICTED: RING-H2 finger protein ATL78-like [Jatropha curcas]
18 Hb_002511_050 0.1625281496 - - ATP binding protein, putative [Ricinus communis]
19 Hb_000658_020 0.1633826816 - - PREDICTED: UDP-glucuronate 4-epimerase 1 [Musa acuminata subsp. malaccensis]
20 Hb_000174_020 0.1636752781 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]

Gene co-expression network

sample Hb_001645_100 Hb_001645_100 Hb_000501_090 Hb_000501_090 Hb_001645_100--Hb_000501_090 Hb_015026_010 Hb_015026_010 Hb_001645_100--Hb_015026_010 Hb_000146_100 Hb_000146_100 Hb_001645_100--Hb_000146_100 Hb_050229_030 Hb_050229_030 Hb_001645_100--Hb_050229_030 Hb_000334_040 Hb_000334_040 Hb_001645_100--Hb_000334_040 Hb_009466_040 Hb_009466_040 Hb_001645_100--Hb_009466_040 Hb_000501_090--Hb_015026_010 Hb_002267_040 Hb_002267_040 Hb_000501_090--Hb_002267_040 Hb_066350_010 Hb_066350_010 Hb_000501_090--Hb_066350_010 Hb_062226_080 Hb_062226_080 Hb_000501_090--Hb_062226_080 Hb_005888_040 Hb_005888_040 Hb_000501_090--Hb_005888_040 Hb_015026_010--Hb_062226_080 Hb_015026_010--Hb_002267_040 Hb_015026_010--Hb_005888_040 Hb_009252_110 Hb_009252_110 Hb_015026_010--Hb_009252_110 Hb_015026_010--Hb_066350_010 Hb_004724_010 Hb_004724_010 Hb_000146_100--Hb_004724_010 Hb_000658_020 Hb_000658_020 Hb_000146_100--Hb_000658_020 Hb_000146_100--Hb_000501_090 Hb_000146_100--Hb_015026_010 Hb_000059_110 Hb_000059_110 Hb_000146_100--Hb_000059_110 Hb_050229_030--Hb_000334_040 Hb_177587_010 Hb_177587_010 Hb_050229_030--Hb_177587_010 Hb_050229_030--Hb_009466_040 Hb_001013_070 Hb_001013_070 Hb_050229_030--Hb_001013_070 Hb_008385_010 Hb_008385_010 Hb_050229_030--Hb_008385_010 Hb_000334_040--Hb_177587_010 Hb_000334_040--Hb_009466_040 Hb_000976_090 Hb_000976_090 Hb_000334_040--Hb_000976_090 Hb_002053_070 Hb_002053_070 Hb_000334_040--Hb_002053_070 Hb_009466_040--Hb_177587_010 Hb_009466_040--Hb_000976_090 Hb_009466_040--Hb_002053_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.282384 0 0.882401 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.119074 0

CAGE analysis