Hb_001645_140

Information

Type -
Description -
Location Contig1645: 216707-222878
Sequence    

Annotation

kegg
ID pop:POPTR_0003s08950g
description DNA-binding family protein
nr
ID XP_012088030.1
description PREDICTED: AT-hook motif nuclear-localized protein 13-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JNN3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26547 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna-binding family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15126: 218271-218600 , PASA_asmbl_15127: 217926-222468
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001645_140 0.0 - - PREDICTED: AT-hook motif nuclear-localized protein 13-like [Jatropha curcas]
2 Hb_000363_400 0.1106376137 - - PREDICTED: protein HOMOLOG OF MAMMALIAN LYST-INTERACTING PROTEIN 5 [Jatropha curcas]
3 Hb_001301_170 0.1176402683 - - PREDICTED: purple acid phosphatase 18 [Jatropha curcas]
4 Hb_000352_260 0.121085661 - - PREDICTED: WD repeat-containing protein LWD1 [Jatropha curcas]
5 Hb_000012_260 0.1211138807 - - Far upstream element-binding 2 [Gossypium arboreum]
6 Hb_005288_010 0.1260752663 - - ubiquitin-protein ligase, putative [Ricinus communis]
7 Hb_011909_070 0.1275542274 - - PREDICTED: uncharacterized protein LOC105632834 [Jatropha curcas]
8 Hb_012114_080 0.1282347777 - - gamma-glutamylcysteine synthetase [Hevea brasiliensis]
9 Hb_000820_120 0.1288389551 - - PREDICTED: uncharacterized protein LOC105639821 [Jatropha curcas]
10 Hb_008147_040 0.1296799805 - - PREDICTED: protein FLX-like 2 [Jatropha curcas]
11 Hb_000014_050 0.1304387578 - - PREDICTED: V-type proton ATPase subunit B 2 [Elaeis guineensis]
12 Hb_000739_100 0.1322190924 - - ku P80 DNA helicase, putative [Ricinus communis]
13 Hb_120803_010 0.1340240326 - - PREDICTED: protein kinase and PP2C-like domain-containing protein [Malus domestica]
14 Hb_001019_180 0.1342247893 - - PREDICTED: uncharacterized protein LOC105639324 [Jatropha curcas]
15 Hb_000664_070 0.1343040122 - - PREDICTED: protein cereblon [Jatropha curcas]
16 Hb_002005_090 0.1347310713 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000656_380 0.1351543769 - - PREDICTED: exportin-T [Jatropha curcas]
18 Hb_000856_310 0.1352317314 - - PREDICTED: hypersensitive-induced response protein 1 [Jatropha curcas]
19 Hb_000556_170 0.1362883336 - - PREDICTED: uncharacterized protein LOC105643102 isoform X2 [Jatropha curcas]
20 Hb_166236_010 0.1371809875 - - -

Gene co-expression network

sample Hb_001645_140 Hb_001645_140 Hb_000363_400 Hb_000363_400 Hb_001645_140--Hb_000363_400 Hb_001301_170 Hb_001301_170 Hb_001645_140--Hb_001301_170 Hb_000352_260 Hb_000352_260 Hb_001645_140--Hb_000352_260 Hb_000012_260 Hb_000012_260 Hb_001645_140--Hb_000012_260 Hb_005288_010 Hb_005288_010 Hb_001645_140--Hb_005288_010 Hb_011909_070 Hb_011909_070 Hb_001645_140--Hb_011909_070 Hb_000363_400--Hb_000352_260 Hb_000922_360 Hb_000922_360 Hb_000363_400--Hb_000922_360 Hb_000363_400--Hb_005288_010 Hb_005389_160 Hb_005389_160 Hb_000363_400--Hb_005389_160 Hb_008160_030 Hb_008160_030 Hb_000363_400--Hb_008160_030 Hb_010381_030 Hb_010381_030 Hb_000363_400--Hb_010381_030 Hb_010053_030 Hb_010053_030 Hb_001301_170--Hb_010053_030 Hb_000664_070 Hb_000664_070 Hb_001301_170--Hb_000664_070 Hb_104061_020 Hb_104061_020 Hb_001301_170--Hb_104061_020 Hb_000823_030 Hb_000823_030 Hb_001301_170--Hb_000823_030 Hb_008147_040 Hb_008147_040 Hb_001301_170--Hb_008147_040 Hb_001318_020 Hb_001318_020 Hb_001301_170--Hb_001318_020 Hb_000352_260--Hb_008160_030 Hb_010417_070 Hb_010417_070 Hb_000352_260--Hb_010417_070 Hb_000352_260--Hb_000823_030 Hb_009083_070 Hb_009083_070 Hb_000352_260--Hb_009083_070 Hb_001723_010 Hb_001723_010 Hb_000352_260--Hb_001723_010 Hb_003835_070 Hb_003835_070 Hb_000012_260--Hb_003835_070 Hb_000656_380 Hb_000656_380 Hb_000012_260--Hb_000656_380 Hb_023226_080 Hb_023226_080 Hb_000012_260--Hb_023226_080 Hb_000614_210 Hb_000614_210 Hb_000012_260--Hb_000614_210 Hb_003058_060 Hb_003058_060 Hb_000012_260--Hb_003058_060 Hb_000107_660 Hb_000107_660 Hb_000012_260--Hb_000107_660 Hb_009767_100 Hb_009767_100 Hb_005288_010--Hb_009767_100 Hb_001005_190 Hb_001005_190 Hb_005288_010--Hb_001005_190 Hb_000322_150 Hb_000322_150 Hb_005288_010--Hb_000322_150 Hb_003055_060 Hb_003055_060 Hb_005288_010--Hb_003055_060 Hb_002872_040 Hb_002872_040 Hb_005288_010--Hb_002872_040 Hb_120803_010 Hb_120803_010 Hb_011909_070--Hb_120803_010 Hb_001047_200 Hb_001047_200 Hb_011909_070--Hb_001047_200 Hb_000236_470 Hb_000236_470 Hb_011909_070--Hb_000236_470 Hb_004032_040 Hb_004032_040 Hb_011909_070--Hb_004032_040 Hb_000577_030 Hb_000577_030 Hb_011909_070--Hb_000577_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.42952 5.85534 4.04043 1.24861 3.74409 3.63132
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.614 2.05404 3.85689 5.48482 1.02316

CAGE analysis