Hb_001646_020

Information

Type -
Description -
Location Contig1646: 44586-49918
Sequence    

Annotation

kegg
ID rcu:RCOM_1115620
description receptor protein kinase, putative (EC:2.7.10.2)
nr
ID XP_012080619.1
description PREDICTED: chitin elicitor receptor kinase 1 isoform X2 [Jatropha curcas]
swissprot
ID A8R7E6
description Chitin elicitor receptor kinase 1 OS=Arabidopsis thaliana GN=CERK1 PE=1 SV=1
trembl
ID B9SH40
description Receptor protein kinase, putative OS=Ricinus communis GN=RCOM_1115620 PE=3 SV=1
Gene Ontology
ID GO:0005622
description receptor protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15134: 44779-49232
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001646_020 0.0 - - PREDICTED: chitin elicitor receptor kinase 1 isoform X2 [Jatropha curcas]
2 Hb_001511_180 0.0811451168 - - Clathrin heavy chain 2 -like protein [Gossypium arboreum]
3 Hb_027760_060 0.0823308609 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
4 Hb_005074_020 0.0860630075 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]
5 Hb_009615_160 0.0950903227 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
6 Hb_033799_010 0.0984041908 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]
7 Hb_000080_110 0.1013753781 - - PREDICTED: GPI ethanolamine phosphate transferase 3 isoform X1 [Jatropha curcas]
8 Hb_080147_050 0.1019958487 - - PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]
9 Hb_000029_170 0.1033366772 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 89-like [Jatropha curcas]
10 Hb_000599_360 0.1060517201 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
11 Hb_000010_420 0.1061265264 - - Callose synthase 10 [Morus notabilis]
12 Hb_016734_020 0.1062622387 - - sugar transporter, putative [Ricinus communis]
13 Hb_158845_060 0.106517494 - - PREDICTED: nudix hydrolase 3 isoform X1 [Jatropha curcas]
14 Hb_000321_090 0.1068531197 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
15 Hb_016734_010 0.1079405978 - - PREDICTED: probable DNA-3-methyladenine glycosylase 2 [Jatropha curcas]
16 Hb_002686_140 0.1100758079 - - PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]
17 Hb_005298_020 0.1116065303 - - PREDICTED: anaphase-promoting complex subunit 2 [Jatropha curcas]
18 Hb_000649_060 0.1119126887 - - PREDICTED: E3 ubiquitin protein ligase RIE1 [Jatropha curcas]
19 Hb_001587_030 0.1121161791 - - hypothetical protein JCGZ_09892 [Jatropha curcas]
20 Hb_003964_110 0.1124595125 - - PREDICTED: pentatricopeptide repeat-containing protein At1g26460, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_001646_020 Hb_001646_020 Hb_001511_180 Hb_001511_180 Hb_001646_020--Hb_001511_180 Hb_027760_060 Hb_027760_060 Hb_001646_020--Hb_027760_060 Hb_005074_020 Hb_005074_020 Hb_001646_020--Hb_005074_020 Hb_009615_160 Hb_009615_160 Hb_001646_020--Hb_009615_160 Hb_033799_010 Hb_033799_010 Hb_001646_020--Hb_033799_010 Hb_000080_110 Hb_000080_110 Hb_001646_020--Hb_000080_110 Hb_009476_120 Hb_009476_120 Hb_001511_180--Hb_009476_120 Hb_001511_180--Hb_033799_010 Hb_002817_060 Hb_002817_060 Hb_001511_180--Hb_002817_060 Hb_001511_180--Hb_005074_020 Hb_000890_070 Hb_000890_070 Hb_001511_180--Hb_000890_070 Hb_000347_300 Hb_000347_300 Hb_001511_180--Hb_000347_300 Hb_000029_170 Hb_000029_170 Hb_027760_060--Hb_000029_170 Hb_027760_060--Hb_005074_020 Hb_002317_010 Hb_002317_010 Hb_027760_060--Hb_002317_010 Hb_008289_040 Hb_008289_040 Hb_027760_060--Hb_008289_040 Hb_002445_030 Hb_002445_030 Hb_027760_060--Hb_002445_030 Hb_011883_020 Hb_011883_020 Hb_005074_020--Hb_011883_020 Hb_005074_020--Hb_000080_110 Hb_005074_020--Hb_009615_160 Hb_002276_040 Hb_002276_040 Hb_005074_020--Hb_002276_040 Hb_011925_020 Hb_011925_020 Hb_005074_020--Hb_011925_020 Hb_001329_200 Hb_001329_200 Hb_009615_160--Hb_001329_200 Hb_016172_030 Hb_016172_030 Hb_009615_160--Hb_016172_030 Hb_021165_010 Hb_021165_010 Hb_009615_160--Hb_021165_010 Hb_060980_010 Hb_060980_010 Hb_009615_160--Hb_060980_010 Hb_024650_080 Hb_024650_080 Hb_009615_160--Hb_024650_080 Hb_033799_010--Hb_000080_110 Hb_171554_040 Hb_171554_040 Hb_033799_010--Hb_171554_040 Hb_000049_250 Hb_000049_250 Hb_033799_010--Hb_000049_250 Hb_007245_020 Hb_007245_020 Hb_033799_010--Hb_007245_020 Hb_033799_010--Hb_005074_020 Hb_000321_090 Hb_000321_090 Hb_000080_110--Hb_000321_090 Hb_000080_110--Hb_000049_250 Hb_000080_110--Hb_011925_020 Hb_006478_030 Hb_006478_030 Hb_000080_110--Hb_006478_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.30802 5.76241 5.02649 6.52241 2.88953 3.14814
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.848746 1.70602 3.63137 7.81952 4.49444

CAGE analysis