Hb_001648_020

Information

Type -
Description -
Location Contig1648: 67560-93375
Sequence    

Annotation

kegg
ID pop:POPTR_0007s07750g
description POPTRDRAFT_819901; hypothetical protein
nr
ID XP_002310078.2
description hypothetical protein POPTR_0007s07750g [Populus trichocarpa]
swissprot
ID F4IN78
description HUA2-like protein 3 OS=Arabidopsis thaliana GN=At2g48160 PE=2 SV=2
trembl
ID B9HGL7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s07750g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15146: 67789-70208 , PASA_asmbl_15147: 70709-74426 , PASA_asmbl_15148: 74773-76854 , PASA_asmbl_15149: 77382-88523 , PASA_asmbl_15151: 88024-88175 , PASA_asmbl_15154: 91227-91383 , PASA_asmbl_15155: 93146-93431
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001648_020 0.0 - - hypothetical protein POPTR_0007s07750g [Populus trichocarpa]
2 Hb_005186_040 0.0484504278 - - PREDICTED: mediator of RNA polymerase II transcription subunit 13 isoform X2 [Jatropha curcas]
3 Hb_012244_020 0.0510962182 - - calpain, putative [Ricinus communis]
4 Hb_005408_030 0.0577415251 - - PREDICTED: uncharacterized protein LOC105648043 [Jatropha curcas]
5 Hb_011174_020 0.0635786543 - - PREDICTED: uncharacterized protein LOC105632610 [Jatropha curcas]
6 Hb_000934_210 0.069291678 - - suppressor of ty, putative [Ricinus communis]
7 Hb_001563_010 0.0698078819 transcription factor TF Family: SET PREDICTED: probable histone-lysine N-methyltransferase ATXR3 [Jatropha curcas]
8 Hb_000958_050 0.0703394749 - - hypothetical protein JCGZ_16781 [Jatropha curcas]
9 Hb_008053_040 0.0709473948 - - PREDICTED: mediator of RNA polymerase II transcription subunit 12-like [Pyrus x bretschneideri]
10 Hb_006816_370 0.0715136437 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105647456 [Jatropha curcas]
11 Hb_001377_100 0.0746802912 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
12 Hb_000579_010 0.0748781245 transcription factor TF Family: SET PREDICTED: probable histone-lysine N-methyltransferase ATXR3 [Jatropha curcas]
13 Hb_001133_030 0.0759496855 - - PREDICTED: MAG2-interacting protein 2-like [Jatropha curcas]
14 Hb_000059_230 0.077997514 - - PREDICTED: uncharacterized protein LOC105648049 [Jatropha curcas]
15 Hb_001488_180 0.0780528323 - - PREDICTED: uncharacterized protein LOC105644152 isoform X1 [Jatropha curcas]
16 Hb_003040_050 0.0785421507 - - PREDICTED: uncharacterized protein LOC105638219 [Jatropha curcas]
17 Hb_001925_060 0.0788503004 - - PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog [Jatropha curcas]
18 Hb_002007_110 0.0788619796 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25 isoform X2 [Jatropha curcas]
19 Hb_002521_020 0.0794029363 - - PREDICTED: pentatricopeptide repeat-containing protein At1g03100, mitochondrial-like isoform X2 [Jatropha curcas]
20 Hb_000363_300 0.0794614727 - - PREDICTED: protein ENHANCED DOWNY MILDEW 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001648_020 Hb_001648_020 Hb_005186_040 Hb_005186_040 Hb_001648_020--Hb_005186_040 Hb_012244_020 Hb_012244_020 Hb_001648_020--Hb_012244_020 Hb_005408_030 Hb_005408_030 Hb_001648_020--Hb_005408_030 Hb_011174_020 Hb_011174_020 Hb_001648_020--Hb_011174_020 Hb_000934_210 Hb_000934_210 Hb_001648_020--Hb_000934_210 Hb_001563_010 Hb_001563_010 Hb_001648_020--Hb_001563_010 Hb_005186_040--Hb_012244_020 Hb_002521_020 Hb_002521_020 Hb_005186_040--Hb_002521_020 Hb_007441_160 Hb_007441_160 Hb_005186_040--Hb_007441_160 Hb_000672_040 Hb_000672_040 Hb_005186_040--Hb_000672_040 Hb_001377_100 Hb_001377_100 Hb_005186_040--Hb_001377_100 Hb_012244_020--Hb_011174_020 Hb_000363_300 Hb_000363_300 Hb_012244_020--Hb_000363_300 Hb_000925_090 Hb_000925_090 Hb_012244_020--Hb_000925_090 Hb_012244_020--Hb_000934_210 Hb_000009_410 Hb_000009_410 Hb_005408_030--Hb_000009_410 Hb_001951_170 Hb_001951_170 Hb_005408_030--Hb_001951_170 Hb_005408_030--Hb_005186_040 Hb_011021_050 Hb_011021_050 Hb_005408_030--Hb_011021_050 Hb_005408_030--Hb_000934_210 Hb_003040_050 Hb_003040_050 Hb_011174_020--Hb_003040_050 Hb_000568_050 Hb_000568_050 Hb_011174_020--Hb_000568_050 Hb_002805_210 Hb_002805_210 Hb_011174_020--Hb_002805_210 Hb_001925_060 Hb_001925_060 Hb_011174_020--Hb_001925_060 Hb_017469_110 Hb_017469_110 Hb_011174_020--Hb_017469_110 Hb_027472_220 Hb_027472_220 Hb_000934_210--Hb_027472_220 Hb_123531_010 Hb_123531_010 Hb_000934_210--Hb_123531_010 Hb_002007_110 Hb_002007_110 Hb_000934_210--Hb_002007_110 Hb_002357_070 Hb_002357_070 Hb_000934_210--Hb_002357_070 Hb_000958_050 Hb_000958_050 Hb_000934_210--Hb_000958_050 Hb_006816_370 Hb_006816_370 Hb_001563_010--Hb_006816_370 Hb_009150_020 Hb_009150_020 Hb_001563_010--Hb_009150_020 Hb_000579_010 Hb_000579_010 Hb_001563_010--Hb_000579_010 Hb_000181_340 Hb_000181_340 Hb_001563_010--Hb_000181_340 Hb_001488_180 Hb_001488_180 Hb_001563_010--Hb_001488_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.74072 5.42003 2.74471 2.70972 2.60801 3.04017
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.53238 2.23753 2.3569 3.26111 5.73723

CAGE analysis