Hb_001652_050

Information

Type -
Description -
Location Contig1652: 57171-57568
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15221: 53397-64547 , PASA_asmbl_15222: 57367-57604
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001652_050 0.0 - - -
2 Hb_023774_010 0.0490860597 - - PREDICTED: uncharacterized protein LOC105635099 [Jatropha curcas]
3 Hb_000613_270 0.0526413723 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
4 Hb_003086_180 0.0637280293 - - PREDICTED: RING-H2 finger protein ATL70-like [Pyrus x bretschneideri]
5 Hb_047923_010 0.0653681091 - - PREDICTED: uncharacterized protein LOC101496717 [Cicer arietinum]
6 Hb_002157_180 0.0729126356 - - separase, putative [Ricinus communis]
7 Hb_008111_020 0.1088275299 - - Receptor like protein 6, putative [Theobroma cacao]
8 Hb_001006_200 0.1148744614 transcription factor TF Family: G2-like conserved hypothetical protein [Ricinus communis]
9 Hb_089843_010 0.1152131827 - - hypothetical protein JCGZ_05278 [Jatropha curcas]
10 Hb_157122_010 0.1260862305 - - hypothetical protein JCGZ_21614 [Jatropha curcas]
11 Hb_003085_050 0.1340990251 - - Polygalacturonase non-catalytic subunit AroGP3 precursor, putative [Ricinus communis]
12 Hb_174514_010 0.1413367113 - - flavin-containing monooxygenase family protein [Populus trichocarpa]
13 Hb_099198_010 0.1546556571 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 isoform X2 [Nicotiana tomentosiformis]
14 Hb_014113_010 0.1639034043 - - PREDICTED: ent-copalyl diphosphate synthase, chloroplastic [Jatropha curcas]
15 Hb_000059_290 0.1652690158 - - pterin-4-alpha-carbinolamine dehydratase, putative [Ricinus communis]
16 Hb_003752_130 0.1653009359 - - PREDICTED: UDP-glycosyltransferase 74F1-like [Jatropha curcas]
17 Hb_084495_010 0.1682051426 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Eucalyptus grandis]
18 Hb_000462_020 0.1683739655 - - UDP-glucosyltransferase, putative [Ricinus communis]
19 Hb_079158_010 0.1753316473 - - PREDICTED: sperm acrosomal protein FSA-ACR.1-like [Jatropha curcas]
20 Hb_000203_030 0.1888880029 - - -

Gene co-expression network

sample Hb_001652_050 Hb_001652_050 Hb_023774_010 Hb_023774_010 Hb_001652_050--Hb_023774_010 Hb_000613_270 Hb_000613_270 Hb_001652_050--Hb_000613_270 Hb_003086_180 Hb_003086_180 Hb_001652_050--Hb_003086_180 Hb_047923_010 Hb_047923_010 Hb_001652_050--Hb_047923_010 Hb_002157_180 Hb_002157_180 Hb_001652_050--Hb_002157_180 Hb_008111_020 Hb_008111_020 Hb_001652_050--Hb_008111_020 Hb_023774_010--Hb_000613_270 Hb_023774_010--Hb_003086_180 Hb_023774_010--Hb_047923_010 Hb_089843_010 Hb_089843_010 Hb_023774_010--Hb_089843_010 Hb_023774_010--Hb_002157_180 Hb_000613_270--Hb_047923_010 Hb_000613_270--Hb_003086_180 Hb_000613_270--Hb_089843_010 Hb_000613_270--Hb_002157_180 Hb_003086_180--Hb_089843_010 Hb_003086_180--Hb_047923_010 Hb_174514_010 Hb_174514_010 Hb_003086_180--Hb_174514_010 Hb_047923_010--Hb_008111_020 Hb_047923_010--Hb_002157_180 Hb_002157_180--Hb_008111_020 Hb_157122_010 Hb_157122_010 Hb_002157_180--Hb_157122_010 Hb_003752_130 Hb_003752_130 Hb_002157_180--Hb_003752_130 Hb_003085_050 Hb_003085_050 Hb_002157_180--Hb_003085_050 Hb_008111_020--Hb_003752_130 Hb_008111_020--Hb_000613_270 Hb_000059_290 Hb_000059_290 Hb_008111_020--Hb_000059_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.21394 0.854955 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.2529 0

CAGE analysis