Hb_001652_080

Information

Type -
Description -
Location Contig1652: 66621-69100
Sequence    

Annotation

kegg
ID rcu:RCOM_0738700
description translation initiation factor, putative
nr
ID XP_012084371.1
description PREDICTED: uncharacterized protein LOC105643776 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JUK2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19582 PE=4 SV=1
Gene Ontology
ID GO:0003743
description eukaryotic translation initiation factor 4b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15223: 66561-69037 , PASA_asmbl_15224: 67822-67921
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001652_080 0.0 - - PREDICTED: uncharacterized protein LOC105643776 [Jatropha curcas]
2 Hb_032202_230 0.0519262592 - - peroxisomal biogenesis factor, putative [Ricinus communis]
3 Hb_000042_340 0.0775694353 - - PREDICTED: vesicle-associated protein 4-1-like [Jatropha curcas]
4 Hb_007904_120 0.0824445497 - - PREDICTED: ALBINO3-like protein 1, chloroplastic [Jatropha curcas]
5 Hb_003994_200 0.0876138777 - - PREDICTED: uncharacterized protein LOC105646142 [Jatropha curcas]
6 Hb_007007_060 0.0888933746 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
7 Hb_000227_250 0.0891191708 transcription factor TF Family: SNF2 PREDICTED: probable ATP-dependent DNA helicase CHR12 [Jatropha curcas]
8 Hb_001377_320 0.0902418728 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH13-like [Jatropha curcas]
9 Hb_001213_130 0.0922382289 - - PREDICTED: fructokinase-like 1, chloroplastic [Jatropha curcas]
10 Hb_000922_020 0.0927597635 - - protein binding protein, putative [Ricinus communis]
11 Hb_000368_020 0.0950337482 - - uroporphyrin-III methyltransferase, putative [Ricinus communis]
12 Hb_000390_310 0.0980370318 - - PREDICTED: uncharacterized protein LOC105632456 isoform X2 [Jatropha curcas]
13 Hb_007943_120 0.098350815 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X4 [Jatropha curcas]
14 Hb_006824_060 0.0991531719 - - PREDICTED: uncharacterized protein LOC105650737 [Jatropha curcas]
15 Hb_000963_130 0.1000419326 - - RNA m5u methyltransferase, putative [Ricinus communis]
16 Hb_022256_060 0.1012484476 - - PREDICTED: uncharacterized protein LOC105628137 [Jatropha curcas]
17 Hb_027073_030 0.1019338907 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Jatropha curcas]
18 Hb_000849_020 0.1027845736 - - PREDICTED: uncharacterized protein LOC105644228 isoform X1 [Jatropha curcas]
19 Hb_008695_020 0.1033870569 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 1 [Jatropha curcas]
20 Hb_003292_050 0.1037563041 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 7 [Jatropha curcas]

Gene co-expression network

sample Hb_001652_080 Hb_001652_080 Hb_032202_230 Hb_032202_230 Hb_001652_080--Hb_032202_230 Hb_000042_340 Hb_000042_340 Hb_001652_080--Hb_000042_340 Hb_007904_120 Hb_007904_120 Hb_001652_080--Hb_007904_120 Hb_003994_200 Hb_003994_200 Hb_001652_080--Hb_003994_200 Hb_007007_060 Hb_007007_060 Hb_001652_080--Hb_007007_060 Hb_000227_250 Hb_000227_250 Hb_001652_080--Hb_000227_250 Hb_000368_020 Hb_000368_020 Hb_032202_230--Hb_000368_020 Hb_006452_160 Hb_006452_160 Hb_032202_230--Hb_006452_160 Hb_000576_050 Hb_000576_050 Hb_032202_230--Hb_000576_050 Hb_032202_230--Hb_003994_200 Hb_032202_230--Hb_000042_340 Hb_000983_120 Hb_000983_120 Hb_000042_340--Hb_000983_120 Hb_000599_080 Hb_000599_080 Hb_000042_340--Hb_000599_080 Hb_010362_030 Hb_010362_030 Hb_000042_340--Hb_010362_030 Hb_000525_100 Hb_000525_100 Hb_000042_340--Hb_000525_100 Hb_003292_050 Hb_003292_050 Hb_000042_340--Hb_003292_050 Hb_001085_250 Hb_001085_250 Hb_007904_120--Hb_001085_250 Hb_001377_320 Hb_001377_320 Hb_007904_120--Hb_001377_320 Hb_007262_020 Hb_007262_020 Hb_007904_120--Hb_007262_020 Hb_007904_120--Hb_007007_060 Hb_012098_110 Hb_012098_110 Hb_007904_120--Hb_012098_110 Hb_002022_060 Hb_002022_060 Hb_007904_120--Hb_002022_060 Hb_003994_200--Hb_007007_060 Hb_021422_010 Hb_021422_010 Hb_003994_200--Hb_021422_010 Hb_000032_490 Hb_000032_490 Hb_003994_200--Hb_000032_490 Hb_003018_060 Hb_003018_060 Hb_003994_200--Hb_003018_060 Hb_001357_090 Hb_001357_090 Hb_003994_200--Hb_001357_090 Hb_003994_200--Hb_000368_020 Hb_000160_210 Hb_000160_210 Hb_007007_060--Hb_000160_210 Hb_008695_020 Hb_008695_020 Hb_007007_060--Hb_008695_020 Hb_000260_100 Hb_000260_100 Hb_007007_060--Hb_000260_100 Hb_006960_050 Hb_006960_050 Hb_007007_060--Hb_006960_050 Hb_004055_150 Hb_004055_150 Hb_007007_060--Hb_004055_150 Hb_033720_010 Hb_033720_010 Hb_007007_060--Hb_033720_010 Hb_005883_010 Hb_005883_010 Hb_000227_250--Hb_005883_010 Hb_005188_060 Hb_005188_060 Hb_000227_250--Hb_005188_060 Hb_000140_330 Hb_000140_330 Hb_000227_250--Hb_000140_330 Hb_000181_120 Hb_000181_120 Hb_000227_250--Hb_000181_120 Hb_007943_120 Hb_007943_120 Hb_000227_250--Hb_007943_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
114.181 66.7353 104.038 31.4268 96.1713 89.6564
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
53.2071 36.2089 44.3998 25.8916 62.7408

CAGE analysis