Hb_001652_090

Information

Type -
Description -
Location Contig1652: 75234-77507
Sequence    

Annotation

kegg
ID rcu:RCOM_0738830
description hypothetical protein
nr
ID XP_002528264.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SQJ5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0738830 PE=4 SV=1
Gene Ontology
ID GO:0008168
description protodermal factor 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15226: 75196-77662
cDNA
(Sanger)
(ID:Location)		 003_D22.ab1: 75227-77314 , 027_M21.ab1: 75227-77292 , 028_G07.ab1: 75227-77270

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001652_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000005_390 0.0366439024 - - hypothetical protein JCGZ_04862 [Jatropha curcas]
3 Hb_000563_110 0.0417445351 - - PREDICTED: uncharacterized protein LOC100306381 isoform X1 [Glycine max]
4 Hb_012368_040 0.0549321628 - - conserved hypothetical protein [Ricinus communis]
5 Hb_008642_020 0.0604019202 - - sterol desaturase, putative [Ricinus communis]
6 Hb_011218_020 0.0613478612 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002045_020 0.0622991565 transcription factor TF Family: AUX/IAA auxin-induced protein aux28 [Populus trichocarpa]
8 Hb_003464_040 0.0643524091 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
9 Hb_005550_060 0.0650513792 transcription factor TF Family: MYB-related transcription factor, putative [Ricinus communis]
10 Hb_006485_020 0.0661238525 - - hypothetical protein JCGZ_15092 [Jatropha curcas]
11 Hb_017959_020 0.0696472041 - - hypothetical protein POPTR_0011s03440g [Populus trichocarpa]
12 Hb_000175_110 0.0732045672 - - hypothetical protein JCGZ_06125 [Jatropha curcas]
13 Hb_028995_020 0.0736987521 - - PREDICTED: uncharacterized protein LOC105642143 [Jatropha curcas]
14 Hb_006332_030 0.0775195982 - - RecName: Full=Valine N-monooxygenase 1; AltName: Full=Cytochrome P450 79D1 [Manihot esculenta]
15 Hb_000023_030 0.0802986292 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG5 [Jatropha curcas]
16 Hb_000155_280 0.0808782696 - - PREDICTED: GDSL esterase/lipase At5g45950 [Jatropha curcas]
17 Hb_005170_050 0.0819994428 - - PREDICTED: double-stranded RNA-binding protein 2-like [Populus euphratica]
18 Hb_007558_060 0.0827872221 - - PREDICTED: uncharacterized protein LOC105644482 [Jatropha curcas]
19 Hb_002376_020 0.08387627 - - lectin, partial [Lathyrus palustris]
20 Hb_000544_150 0.0839486326 transcription factor TF Family: HB PREDICTED: WUSCHEL-related homeobox 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001652_090 Hb_001652_090 Hb_000005_390 Hb_000005_390 Hb_001652_090--Hb_000005_390 Hb_000563_110 Hb_000563_110 Hb_001652_090--Hb_000563_110 Hb_012368_040 Hb_012368_040 Hb_001652_090--Hb_012368_040 Hb_008642_020 Hb_008642_020 Hb_001652_090--Hb_008642_020 Hb_011218_020 Hb_011218_020 Hb_001652_090--Hb_011218_020 Hb_002045_020 Hb_002045_020 Hb_001652_090--Hb_002045_020 Hb_005550_060 Hb_005550_060 Hb_000005_390--Hb_005550_060 Hb_000005_390--Hb_008642_020 Hb_000544_150 Hb_000544_150 Hb_000005_390--Hb_000544_150 Hb_000005_390--Hb_000563_110 Hb_006485_020 Hb_006485_020 Hb_000005_390--Hb_006485_020 Hb_000563_110--Hb_008642_020 Hb_000175_110 Hb_000175_110 Hb_000563_110--Hb_000175_110 Hb_000563_110--Hb_002045_020 Hb_000563_110--Hb_012368_040 Hb_003464_040 Hb_003464_040 Hb_012368_040--Hb_003464_040 Hb_003226_040 Hb_003226_040 Hb_012368_040--Hb_003226_040 Hb_000193_170 Hb_000193_170 Hb_012368_040--Hb_000193_170 Hb_000375_200 Hb_000375_200 Hb_012368_040--Hb_000375_200 Hb_007558_060 Hb_007558_060 Hb_008642_020--Hb_007558_060 Hb_008642_020--Hb_005550_060 Hb_005170_050 Hb_005170_050 Hb_008642_020--Hb_005170_050 Hb_008642_020--Hb_000544_150 Hb_006332_030 Hb_006332_030 Hb_011218_020--Hb_006332_030 Hb_028995_020 Hb_028995_020 Hb_011218_020--Hb_028995_020 Hb_017959_020 Hb_017959_020 Hb_011218_020--Hb_017959_020 Hb_011218_020--Hb_000563_110 Hb_004117_240 Hb_004117_240 Hb_011218_020--Hb_004117_240 Hb_000023_030 Hb_000023_030 Hb_002045_020--Hb_000023_030 Hb_002045_020--Hb_003226_040 Hb_002045_020--Hb_000005_390 Hb_000005_160 Hb_000005_160 Hb_002045_020--Hb_000005_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 122.803 17.3805 0 0.0543117
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 4.93657

CAGE analysis