Hb_001652_100

Information

Type -
Description -
Location Contig1652: 139339-141973
Sequence    

Annotation

kegg
ID rcu:RCOM_0739230
description amidase, putative (EC:3.5.1.4)
nr
ID XP_012084367.1
description PREDICTED: putative amidase C869.01 [Jatropha curcas]
swissprot
ID Q9URY4
description Putative amidase C869.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC869.01 PE=3 SV=1
trembl
ID A0A067K5N3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19575 PE=4 SV=1
Gene Ontology
ID GO:0004040
description amidase family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001652_100 0.0 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
2 Hb_008021_060 0.0423978376 - - Squalene monooxygenase, putative [Ricinus communis]
3 Hb_007120_120 0.051203341 - - protein binding protein, putative [Ricinus communis]
4 Hb_007922_030 0.0548213017 - - PREDICTED: uncharacterized protein LOC105111213 [Populus euphratica]
5 Hb_000058_180 0.055518444 - - PREDICTED: protein ECERIFERUM 3 [Jatropha curcas]
6 Hb_009663_020 0.057324799 - - -
7 Hb_016734_100 0.0645684846 - - -
8 Hb_132840_190 0.0665057503 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
9 Hb_001642_020 0.0673051712 - - PREDICTED: probable cinnamyl alcohol dehydrogenase 9 [Jatropha curcas]
10 Hb_008147_020 0.0677163112 - - hypothetical protein JCGZ_25652 [Jatropha curcas]
11 Hb_000321_110 0.0690253818 - - Uncharacterized protein TCM_041937 [Theobroma cacao]
12 Hb_024071_030 0.0710512143 - - hypothetical protein CICLE_v10025479mg [Citrus clementina]
13 Hb_012035_010 0.0735875908 - - hypothetical protein JCGZ_21143 [Jatropha curcas]
14 Hb_000487_080 0.0746321992 - - PREDICTED: probable potassium transporter 13 [Jatropha curcas]
15 Hb_007221_020 0.0788098434 - - FAD-binding domain-containing family protein [Populus trichocarpa]
16 Hb_001031_140 0.0796334061 - - PREDICTED: GDSL esterase/lipase At5g33370-like [Jatropha curcas]
17 Hb_001426_020 0.0845026081 - - hypothetical protein CICLE_v10033594mg, partial [Citrus clementina]
18 Hb_000538_090 0.0851072165 transcription factor TF Family: NAC hypothetical protein RCOM_1603380 [Ricinus communis]
19 Hb_163566_010 0.0855683258 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic isoform X2 [Amborella trichopoda]
20 Hb_002043_020 0.0879959299 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH87 [Jatropha curcas]

Gene co-expression network

sample Hb_001652_100 Hb_001652_100 Hb_008021_060 Hb_008021_060 Hb_001652_100--Hb_008021_060 Hb_007120_120 Hb_007120_120 Hb_001652_100--Hb_007120_120 Hb_007922_030 Hb_007922_030 Hb_001652_100--Hb_007922_030 Hb_000058_180 Hb_000058_180 Hb_001652_100--Hb_000058_180 Hb_009663_020 Hb_009663_020 Hb_001652_100--Hb_009663_020 Hb_016734_100 Hb_016734_100 Hb_001652_100--Hb_016734_100 Hb_008021_060--Hb_007922_030 Hb_008021_060--Hb_000058_180 Hb_008147_020 Hb_008147_020 Hb_008021_060--Hb_008147_020 Hb_132840_190 Hb_132840_190 Hb_008021_060--Hb_132840_190 Hb_008021_060--Hb_007120_120 Hb_007120_120--Hb_009663_020 Hb_024071_030 Hb_024071_030 Hb_007120_120--Hb_024071_030 Hb_007120_120--Hb_016734_100 Hb_163566_010 Hb_163566_010 Hb_007120_120--Hb_163566_010 Hb_001642_020 Hb_001642_020 Hb_007120_120--Hb_001642_020 Hb_007221_020 Hb_007221_020 Hb_007922_030--Hb_007221_020 Hb_001021_120 Hb_001021_120 Hb_007922_030--Hb_001021_120 Hb_007922_030--Hb_000058_180 Hb_031321_020 Hb_031321_020 Hb_007922_030--Hb_031321_020 Hb_000538_090 Hb_000538_090 Hb_000058_180--Hb_000538_090 Hb_000058_180--Hb_008147_020 Hb_000058_180--Hb_001642_020 Hb_009663_020--Hb_024071_030 Hb_009663_020--Hb_163566_010 Hb_009663_020--Hb_016734_100 Hb_000321_110 Hb_000321_110 Hb_009663_020--Hb_000321_110 Hb_001426_020 Hb_001426_020 Hb_016734_100--Hb_001426_020 Hb_000487_080 Hb_000487_080 Hb_016734_100--Hb_000487_080 Hb_016734_100--Hb_001642_020 Hb_001031_140 Hb_001031_140 Hb_016734_100--Hb_001031_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.216537 52.6224 38.247 0 0.0108086
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0252425 0 0 0.363839 33.5986

CAGE analysis