Hb_001653_020

Information

Type transcription factor
Description TF Family: C2H2
Location Contig1653: 15127-18688
Sequence    

Annotation

kegg
ID rcu:RCOM_1498650
description rar1, putative
nr
ID XP_002510896.1
description rar1, putative [Ricinus communis]
swissprot
ID Q9SE33
description Cysteine and histidine-rich domain-containing protein RAR1 OS=Arabidopsis thaliana GN=RAR1 PE=1 SV=1
trembl
ID B9R9M1
description Rar1, putative OS=Ricinus communis GN=RCOM_1498650 PE=4 SV=1
Gene Ontology
ID GO:0005488
description cysteine and histidine-rich domain-containing protein rar1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15232: 18323-18577 , PASA_asmbl_15233: 18587-18709
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001653_020 0.0 transcription factor TF Family: C2H2 rar1, putative [Ricinus communis]
2 Hb_002061_040 0.0633777035 - - PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
3 Hb_000414_130 0.0761680962 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
4 Hb_008173_110 0.0766655209 - - DNA binding protein, putative [Ricinus communis]
5 Hb_003787_010 0.0829420716 - - PREDICTED: 40S ribosomal protein S3-3-like [Phoenix dactylifera]
6 Hb_001215_040 0.0853959366 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003918_010 0.0854211037 - - PREDICTED: biotin--protein ligase 2-like [Jatropha curcas]
8 Hb_029584_050 0.0857816444 - - PREDICTED: inorganic pyrophosphatase 3 [Jatropha curcas]
9 Hb_004734_040 0.086669244 - - eukaryotic translation initiation factor 5A isoform I [Hevea brasiliensis]
10 Hb_000028_590 0.0897125342 - - PREDICTED: putative serine/threonine-protein kinase [Jatropha curcas]
11 Hb_172426_040 0.0897820881 - - PREDICTED: ELL-associated factor 1 [Jatropha curcas]
12 Hb_000496_120 0.0899637452 - - PREDICTED: iron-sulfur protein NUBPL [Jatropha curcas]
13 Hb_008695_050 0.0903674584 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000015_040 0.0910724912 - - PREDICTED: uncharacterized protein LOC105647937 isoform X2 [Jatropha curcas]
15 Hb_034406_030 0.0959840758 - - PREDICTED: dihydroorotate dehydrogenase (quinone), mitochondrial [Musa acuminata subsp. malaccensis]
16 Hb_000005_080 0.0963557459 - - PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Elaeis guineensis]
17 Hb_000665_050 0.09653634 - - PREDICTED: aberrant root formation protein 4 [Jatropha curcas]
18 Hb_089995_010 0.0969499572 - - PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like [Eucalyptus grandis]
19 Hb_006907_130 0.0972532807 - - unnamed protein product [Coffea canephora]
20 Hb_018124_010 0.0983340508 - - PREDICTED: mitochondrial uncoupling protein 1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001653_020 Hb_001653_020 Hb_002061_040 Hb_002061_040 Hb_001653_020--Hb_002061_040 Hb_000414_130 Hb_000414_130 Hb_001653_020--Hb_000414_130 Hb_008173_110 Hb_008173_110 Hb_001653_020--Hb_008173_110 Hb_003787_010 Hb_003787_010 Hb_001653_020--Hb_003787_010 Hb_001215_040 Hb_001215_040 Hb_001653_020--Hb_001215_040 Hb_003918_010 Hb_003918_010 Hb_001653_020--Hb_003918_010 Hb_012053_070 Hb_012053_070 Hb_002061_040--Hb_012053_070 Hb_007416_320 Hb_007416_320 Hb_002061_040--Hb_007416_320 Hb_001519_050 Hb_001519_050 Hb_002061_040--Hb_001519_050 Hb_000009_460 Hb_000009_460 Hb_002061_040--Hb_000009_460 Hb_172426_040 Hb_172426_040 Hb_002061_040--Hb_172426_040 Hb_015778_010 Hb_015778_010 Hb_000414_130--Hb_015778_010 Hb_000665_050 Hb_000665_050 Hb_000414_130--Hb_000665_050 Hb_000030_030 Hb_000030_030 Hb_000414_130--Hb_000030_030 Hb_003502_060 Hb_003502_060 Hb_000414_130--Hb_003502_060 Hb_005306_180 Hb_005306_180 Hb_000414_130--Hb_005306_180 Hb_003994_260 Hb_003994_260 Hb_008173_110--Hb_003994_260 Hb_004453_050 Hb_004453_050 Hb_008173_110--Hb_004453_050 Hb_000069_420 Hb_000069_420 Hb_008173_110--Hb_000069_420 Hb_000210_120 Hb_000210_120 Hb_008173_110--Hb_000210_120 Hb_029584_050 Hb_029584_050 Hb_008173_110--Hb_029584_050 Hb_000217_030 Hb_000217_030 Hb_003787_010--Hb_000217_030 Hb_002995_020 Hb_002995_020 Hb_003787_010--Hb_002995_020 Hb_003787_010--Hb_172426_040 Hb_005846_040 Hb_005846_040 Hb_003787_010--Hb_005846_040 Hb_000020_060 Hb_000020_060 Hb_003787_010--Hb_000020_060 Hb_015279_010 Hb_015279_010 Hb_003787_010--Hb_015279_010 Hb_000312_080 Hb_000312_080 Hb_001215_040--Hb_000312_080 Hb_000175_540 Hb_000175_540 Hb_001215_040--Hb_000175_540 Hb_000023_280 Hb_000023_280 Hb_001215_040--Hb_000023_280 Hb_011344_120 Hb_011344_120 Hb_001215_040--Hb_011344_120 Hb_005365_030 Hb_005365_030 Hb_001215_040--Hb_005365_030 Hb_003918_010--Hb_172426_040 Hb_000221_160 Hb_000221_160 Hb_003918_010--Hb_000221_160 Hb_001140_370 Hb_001140_370 Hb_003918_010--Hb_001140_370 Hb_002473_130 Hb_002473_130 Hb_003918_010--Hb_002473_130 Hb_000028_590 Hb_000028_590 Hb_003918_010--Hb_000028_590 Hb_008511_120 Hb_008511_120 Hb_003918_010--Hb_008511_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.9356 22.7483 18.3577 32.7377 20.6207 29.5817
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
60.7831 55.6072 38.7622 46.8216 14.7157

CAGE analysis