Hb_001655_070

Information

Type -
Description -
Location Contig1655: 76845-81951
Sequence    

Annotation

kegg
ID rcu:RCOM_1449090
description phd finger transcription factor, putative
nr
ID XP_012067206.1
description PREDICTED: chromatin structure-remodeling complex subunit RSC1 [Jatropha curcas]
swissprot
ID Q9P281
description BAH and coiled-coil domain-containing protein 1 OS=Homo sapiens GN=BAHCC1 PE=1 SV=3
trembl
ID A0A067KZZ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26764 PE=4 SV=1
Gene Ontology
ID GO:0005634
description phd finger transcription

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15246: 77427-78781 , PASA_asmbl_15247: 79846-80140
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001655_070 0.0 - - PREDICTED: chromatin structure-remodeling complex subunit RSC1 [Jatropha curcas]
2 Hb_004055_010 0.0839511763 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
3 Hb_000059_210 0.0846817409 - - conserved hypothetical protein [Ricinus communis]
4 Hb_008959_030 0.0875218608 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
5 Hb_002400_070 0.0882074932 transcription factor TF Family: AUX/IAA PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56140 [Jatropha curcas]
6 Hb_004221_010 0.0910440842 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
7 Hb_015941_030 0.0920577918 - - unknown [Populus trichocarpa]
8 Hb_004223_090 0.0948089529 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FC isoform X2 [Jatropha curcas]
9 Hb_000923_020 0.0968571238 - - PREDICTED: ankyrin repeat domain-containing protein 65-like [Jatropha curcas]
10 Hb_029584_080 0.0970331683 - - serine acetyltransferase [Hevea brasiliensis]
11 Hb_000116_480 0.1001502496 - - PREDICTED: MORC family CW-type zinc finger protein 3-like [Jatropha curcas]
12 Hb_000300_280 0.1003107835 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 isoform X1 [Jatropha curcas]
13 Hb_050455_010 0.1003914258 - - PREDICTED: prosaposin isoform X2 [Jatropha curcas]
14 Hb_000802_080 0.1041868597 - - PREDICTED: F-box protein At5g46170-like [Jatropha curcas]
15 Hb_030312_040 0.1043016825 - - hypothetical protein JCGZ_04876 [Jatropha curcas]
16 Hb_000483_360 0.1045745052 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 26 [Jatropha curcas]
17 Hb_002232_170 0.1048127601 - - PREDICTED: uncharacterized protein LOC105635984 [Jatropha curcas]
18 Hb_005324_010 0.1049076526 - - Chaperone protein dnaJ, putative [Ricinus communis]
19 Hb_000237_080 0.1065964525 transcription factor TF Family: PHD PREDICTED: chromatin structure-remodeling complex subunit RSC1 [Jatropha curcas]
20 Hb_123475_010 0.1075002011 - - PREDICTED: hepatocyte growth factor-regulated tyrosine kinase substrate [Jatropha curcas]

Gene co-expression network

sample Hb_001655_070 Hb_001655_070 Hb_004055_010 Hb_004055_010 Hb_001655_070--Hb_004055_010 Hb_000059_210 Hb_000059_210 Hb_001655_070--Hb_000059_210 Hb_008959_030 Hb_008959_030 Hb_001655_070--Hb_008959_030 Hb_002400_070 Hb_002400_070 Hb_001655_070--Hb_002400_070 Hb_004221_010 Hb_004221_010 Hb_001655_070--Hb_004221_010 Hb_015941_030 Hb_015941_030 Hb_001655_070--Hb_015941_030 Hb_004055_010--Hb_008959_030 Hb_004055_010--Hb_004221_010 Hb_000483_350 Hb_000483_350 Hb_004055_010--Hb_000483_350 Hb_004109_200 Hb_004109_200 Hb_004055_010--Hb_004109_200 Hb_002762_060 Hb_002762_060 Hb_004055_010--Hb_002762_060 Hb_001936_020 Hb_001936_020 Hb_000059_210--Hb_001936_020 Hb_006586_050 Hb_006586_050 Hb_000059_210--Hb_006586_050 Hb_156850_030 Hb_156850_030 Hb_000059_210--Hb_156850_030 Hb_000291_190 Hb_000291_190 Hb_000059_210--Hb_000291_190 Hb_033152_080 Hb_033152_080 Hb_000059_210--Hb_033152_080 Hb_004734_060 Hb_004734_060 Hb_000059_210--Hb_004734_060 Hb_008959_030--Hb_000483_350 Hb_008959_030--Hb_004109_200 Hb_005928_110 Hb_005928_110 Hb_008959_030--Hb_005928_110 Hb_008959_030--Hb_004221_010 Hb_000849_070 Hb_000849_070 Hb_002400_070--Hb_000849_070 Hb_000703_090 Hb_000703_090 Hb_002400_070--Hb_000703_090 Hb_003656_130 Hb_003656_130 Hb_002400_070--Hb_003656_130 Hb_050455_010 Hb_050455_010 Hb_002400_070--Hb_050455_010 Hb_123475_010 Hb_123475_010 Hb_002400_070--Hb_123475_010 Hb_158092_070 Hb_158092_070 Hb_004221_010--Hb_158092_070 Hb_004221_010--Hb_002762_060 Hb_001248_050 Hb_001248_050 Hb_004221_010--Hb_001248_050 Hb_000032_570 Hb_000032_570 Hb_004221_010--Hb_000032_570 Hb_000877_060 Hb_000877_060 Hb_004221_010--Hb_000877_060 Hb_029584_080 Hb_029584_080 Hb_015941_030--Hb_029584_080 Hb_000808_040 Hb_000808_040 Hb_015941_030--Hb_000808_040 Hb_002232_170 Hb_002232_170 Hb_015941_030--Hb_002232_170 Hb_000116_110 Hb_000116_110 Hb_015941_030--Hb_000116_110 Hb_008406_160 Hb_008406_160 Hb_015941_030--Hb_008406_160 Hb_002475_160 Hb_002475_160 Hb_015941_030--Hb_002475_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.384 22.4296 2.85693 12.4942 27.8789 35.2689
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.6641 23.0911 19.6389 15.9444 2.78691

CAGE analysis