Hb_001660_020

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig1660: 8049-16144
Sequence    

Annotation

kegg
ID vvi:100258575
description TMV resistance protein N-like
nr
ID KGN52641.1
description hypothetical protein Csa_5G648130 [Cucumis sativus]
swissprot
ID F4KHH8
description Disease resistance protein RPS6 OS=Arabidopsis thaliana GN=RPS6 PE=1 SV=1
trembl
ID A0A0A0KXU7
description Uncharacterized protein OS=Cucumis sativus GN=Csa_5G648130 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001660_020 0.0 desease resistance Gene Name: NB-ARC hypothetical protein Csa_5G648130 [Cucumis sativus]
2 Hb_004724_230 0.2143098846 - - hypothetical protein JCGZ_12701 [Jatropha curcas]
3 Hb_184520_010 0.2695077485 - - Disease resistance protein RPS5, putative [Ricinus communis]
4 Hb_006268_020 0.2816348138 - - hypothetical protein JCGZ_10516 [Jatropha curcas]
5 Hb_000422_120 0.2845613777 - - PREDICTED: 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B [Jatropha curcas]
6 Hb_055101_010 0.2847602977 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
7 Hb_007064_010 0.2872617202 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39680 [Jatropha curcas]
8 Hb_052689_010 0.2890009325 - - heat shock cognate protein [Solanum commersonii]
9 Hb_069033_010 0.2931166057 desease resistance Gene Name: DUF720 hypothetical protein CICLE_v10002052mg [Citrus clementina]
10 Hb_001157_100 0.2935918804 - - PREDICTED: uncharacterized protein LOC104887185 [Beta vulgaris subsp. vulgaris]
11 Hb_001446_010 0.3005346678 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
12 Hb_054127_050 0.3046568533 - - PREDICTED: uncharacterized protein LOC105638784 isoform X1 [Jatropha curcas]
13 Hb_003861_020 0.3058986032 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like isoform X2 [Nelumbo nucifera]
14 Hb_000000_100 0.3065958539 - - hypothetical protein POPTR_0002s13260g [Populus trichocarpa]
15 Hb_002686_380 0.3085665812 - - -
16 Hb_176825_010 0.3125536236 - - PREDICTED: uncharacterized protein LOC105630857 isoform X2 [Jatropha curcas]
17 Hb_002513_030 0.3128308777 - - PREDICTED: alpha-L-fucosidase 2-like isoform X2 [Elaeis guineensis]
18 Hb_080952_010 0.3129737436 - - PREDICTED: pentatricopeptide repeat-containing protein At4g20770 [Jatropha curcas]
19 Hb_001008_040 0.3135922465 - - Late embryogenesis abundant protein D-7, putative [Ricinus communis]
20 Hb_000432_060 0.3138485731 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001660_020 Hb_001660_020 Hb_004724_230 Hb_004724_230 Hb_001660_020--Hb_004724_230 Hb_184520_010 Hb_184520_010 Hb_001660_020--Hb_184520_010 Hb_006268_020 Hb_006268_020 Hb_001660_020--Hb_006268_020 Hb_000422_120 Hb_000422_120 Hb_001660_020--Hb_000422_120 Hb_055101_010 Hb_055101_010 Hb_001660_020--Hb_055101_010 Hb_007064_010 Hb_007064_010 Hb_001660_020--Hb_007064_010 Hb_004724_230--Hb_000422_120 Hb_054127_050 Hb_054127_050 Hb_004724_230--Hb_054127_050 Hb_002513_030 Hb_002513_030 Hb_004724_230--Hb_002513_030 Hb_004553_020 Hb_004553_020 Hb_004724_230--Hb_004553_020 Hb_001523_020 Hb_001523_020 Hb_004724_230--Hb_001523_020 Hb_001157_100 Hb_001157_100 Hb_184520_010--Hb_001157_100 Hb_002666_020 Hb_002666_020 Hb_184520_010--Hb_002666_020 Hb_003805_060 Hb_003805_060 Hb_184520_010--Hb_003805_060 Hb_012788_010 Hb_012788_010 Hb_184520_010--Hb_012788_010 Hb_069033_010 Hb_069033_010 Hb_184520_010--Hb_069033_010 Hb_053125_010 Hb_053125_010 Hb_184520_010--Hb_053125_010 Hb_052689_010 Hb_052689_010 Hb_006268_020--Hb_052689_010 Hb_000512_070 Hb_000512_070 Hb_006268_020--Hb_000512_070 Hb_000820_050 Hb_000820_050 Hb_006268_020--Hb_000820_050 Hb_008760_010 Hb_008760_010 Hb_006268_020--Hb_008760_010 Hb_000115_010 Hb_000115_010 Hb_006268_020--Hb_000115_010 Hb_004846_160 Hb_004846_160 Hb_006268_020--Hb_004846_160 Hb_001817_020 Hb_001817_020 Hb_000422_120--Hb_001817_020 Hb_073452_010 Hb_073452_010 Hb_000422_120--Hb_073452_010 Hb_000422_120--Hb_054127_050 Hb_001780_120 Hb_001780_120 Hb_000422_120--Hb_001780_120 Hb_000827_060 Hb_000827_060 Hb_000422_120--Hb_000827_060 Hb_004785_140 Hb_004785_140 Hb_055101_010--Hb_004785_140 Hb_000990_060 Hb_000990_060 Hb_055101_010--Hb_000990_060 Hb_002205_190 Hb_002205_190 Hb_055101_010--Hb_002205_190 Hb_080952_010 Hb_080952_010 Hb_055101_010--Hb_080952_010 Hb_000362_120 Hb_000362_120 Hb_055101_010--Hb_000362_120 Hb_002496_040 Hb_002496_040 Hb_055101_010--Hb_002496_040 Hb_000189_110 Hb_000189_110 Hb_007064_010--Hb_000189_110 Hb_000193_140 Hb_000193_140 Hb_007064_010--Hb_000193_140 Hb_002780_010 Hb_002780_010 Hb_007064_010--Hb_002780_010 Hb_140627_020 Hb_140627_020 Hb_007064_010--Hb_140627_020 Hb_002311_100 Hb_002311_100 Hb_007064_010--Hb_002311_100 Hb_002316_160 Hb_002316_160 Hb_007064_010--Hb_002316_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00948584 1.12291 0.0792974 0.14104 0.131124 1.5686
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.150866 0.101749 3.02617 1.57812 0.932925

CAGE analysis