Hb_001660_050

Information

Type -
Description -
Location Contig1660: 33170-34162
Sequence    

Annotation

kegg
ID egr:104456642
description probable LRR receptor-like serine/threonine-protein kinase At4g08850
nr
ID XP_010069796.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Eucalyptus grandis]
swissprot
ID Q9S7U9
description Mitogen-activated protein kinase kinase 2 OS=Arabidopsis thaliana GN=MKK2 PE=1 SV=2
trembl
ID A0A0B0PK35
description Uncharacterized protein OS=Gossypium arboreum GN=F383_32894 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable lrr receptor-like serine threonine-protein kinase at4g08850

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001660_050 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Eucalyptus grandis]
2 Hb_170878_050 0.0642111689 - - retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]
3 Hb_002622_010 0.0712231167 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
4 Hb_009659_040 0.0768426435 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER [Populus euphratica]
5 Hb_029866_110 0.0769420803 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter C family member 10-like [Jatropha curcas]
6 Hb_029576_080 0.0784999329 - - Aspartic proteinase precursor, putative [Ricinus communis]
7 Hb_000917_120 0.103047202 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000203_080 0.1117975442 - - Xylem bark cysteine peptidase 3 isoform 1 [Theobroma cacao]
9 Hb_010839_010 0.1154115071 - - receptor-kinase, putative [Ricinus communis]
10 Hb_001819_010 0.1216485733 - - PREDICTED: potassium transporter 8 [Jatropha curcas]
11 Hb_005276_220 0.1234768099 transcription factor TF Family: bHLH PREDICTED: basic helix-loop-helix protein A [Jatropha curcas]
12 Hb_001109_130 0.1235297204 - - PREDICTED: coiled-coil domain-containing protein 136 isoform X1 [Jatropha curcas]
13 Hb_000011_120 0.1290096352 - - PREDICTED: ATPase 10, plasma membrane-type-like [Populus euphratica]
14 Hb_000840_050 0.1298752625 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Vitis vinifera]
15 Hb_010880_010 0.1312332698 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
16 Hb_016637_020 0.1319969907 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
17 Hb_009150_060 0.1330977867 - - PREDICTED: cytochrome P450 CYP749A22-like [Prunus mume]
18 Hb_000597_080 0.1337019841 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like isoform X2 [Jatropha curcas]
19 Hb_004627_020 0.1343091162 - - Protein MLO, putative [Ricinus communis]
20 Hb_004943_010 0.1352210208 - - cationic amino acid transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_001660_050 Hb_001660_050 Hb_170878_050 Hb_170878_050 Hb_001660_050--Hb_170878_050 Hb_002622_010 Hb_002622_010 Hb_001660_050--Hb_002622_010 Hb_009659_040 Hb_009659_040 Hb_001660_050--Hb_009659_040 Hb_029866_110 Hb_029866_110 Hb_001660_050--Hb_029866_110 Hb_029576_080 Hb_029576_080 Hb_001660_050--Hb_029576_080 Hb_000917_120 Hb_000917_120 Hb_001660_050--Hb_000917_120 Hb_170878_050--Hb_029866_110 Hb_016637_020 Hb_016637_020 Hb_170878_050--Hb_016637_020 Hb_170878_050--Hb_009659_040 Hb_001819_010 Hb_001819_010 Hb_170878_050--Hb_001819_010 Hb_001634_080 Hb_001634_080 Hb_170878_050--Hb_001634_080 Hb_001607_070 Hb_001607_070 Hb_002622_010--Hb_001607_070 Hb_004943_010 Hb_004943_010 Hb_002622_010--Hb_004943_010 Hb_002622_010--Hb_009659_040 Hb_000203_080 Hb_000203_080 Hb_002622_010--Hb_000203_080 Hb_002622_010--Hb_029576_080 Hb_009659_040--Hb_000917_120 Hb_138606_020 Hb_138606_020 Hb_009659_040--Hb_138606_020 Hb_000840_050 Hb_000840_050 Hb_009659_040--Hb_000840_050 Hb_009659_040--Hb_029866_110 Hb_123560_050 Hb_123560_050 Hb_029866_110--Hb_123560_050 Hb_029866_110--Hb_016637_020 Hb_029866_110--Hb_001819_010 Hb_010839_010 Hb_010839_010 Hb_029576_080--Hb_010839_010 Hb_029576_080--Hb_000917_120 Hb_029576_080--Hb_009659_040 Hb_000011_120 Hb_000011_120 Hb_029576_080--Hb_000011_120 Hb_029576_080--Hb_170878_050 Hb_006120_030 Hb_006120_030 Hb_000917_120--Hb_006120_030 Hb_000597_080 Hb_000597_080 Hb_000917_120--Hb_000597_080 Hb_000917_120--Hb_000011_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.573199 0.44505 0.43094 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.27762 0.840982

CAGE analysis