Hb_001660_080

Information

Type -
Description -
Location Contig1660: 80770-83023
Sequence    

Annotation

kegg
ID rcu:RCOM_1330180
description leucine-rich repeat-containing protein, putative
nr
ID KDP31604.1
description hypothetical protein JCGZ_14829 [Jatropha curcas]
swissprot
ID Q40392
description TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1
trembl
ID A0A067KID9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14829 PE=4 SV=1
Gene Ontology
ID GO:0043531
description tmv resistance protein n-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15298: 80784-80925 , PASA_asmbl_15299: 82692-82835 , PASA_asmbl_15300: 82991-83094
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001660_080 0.0 - - hypothetical protein JCGZ_14829 [Jatropha curcas]
2 Hb_005381_010 0.0858192506 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH35 isoform X1 [Jatropha curcas]
3 Hb_000836_420 0.0888921698 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
4 Hb_121540_010 0.0898701823 - - PREDICTED: UDP-glycosyltransferase 88A1-like [Jatropha curcas]
5 Hb_003060_150 0.0957351209 - - UDP-glucosyltransferase, putative [Ricinus communis]
6 Hb_000035_140 0.0962470545 transcription factor TF Family: WRKY putative WRKY transcription factor family protein [Populus trichocarpa]
7 Hb_189208_060 0.0979092308 - - PREDICTED: two-pore potassium channel 5 [Jatropha curcas]
8 Hb_000069_530 0.0981369945 transcription factor TF Family: WRKY hypothetical protein POPTR_0014s09190g [Populus trichocarpa]
9 Hb_000172_410 0.0984992393 - - metal ion binding protein, putative [Ricinus communis]
10 Hb_077694_010 0.0986680199 - - uncharacterized protein LOC100305624 [Glycine max]
11 Hb_002311_160 0.0991434523 transcription factor TF Family: ARR-B sensor histidine kinase, putative [Ricinus communis]
12 Hb_001160_050 0.1083980481 - - PREDICTED: long-chain-alcohol oxidase FAO1 [Jatropha curcas]
13 Hb_012496_020 0.114600436 - - receptor serine/threonine kinase, putative [Ricinus communis]
14 Hb_002400_020 0.1199341973 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
15 Hb_004551_010 0.1206352031 - - tryptophan synthase beta chain, putative [Ricinus communis]
16 Hb_001369_670 0.1277113653 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
17 Hb_003078_070 0.1300414045 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At3g25290 [Jatropha curcas]
18 Hb_002374_030 0.1300954446 - - PREDICTED: probable receptor-like protein kinase At1g11050 isoform X1 [Jatropha curcas]
19 Hb_009252_090 0.1306901073 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
20 Hb_004837_200 0.1317667048 - - hypothetical protein POPTR_0001s26450g [Populus trichocarpa]

Gene co-expression network

sample Hb_001660_080 Hb_001660_080 Hb_005381_010 Hb_005381_010 Hb_001660_080--Hb_005381_010 Hb_000836_420 Hb_000836_420 Hb_001660_080--Hb_000836_420 Hb_121540_010 Hb_121540_010 Hb_001660_080--Hb_121540_010 Hb_003060_150 Hb_003060_150 Hb_001660_080--Hb_003060_150 Hb_000035_140 Hb_000035_140 Hb_001660_080--Hb_000035_140 Hb_189208_060 Hb_189208_060 Hb_001660_080--Hb_189208_060 Hb_000069_530 Hb_000069_530 Hb_005381_010--Hb_000069_530 Hb_005381_010--Hb_121540_010 Hb_005381_010--Hb_003060_150 Hb_182167_010 Hb_182167_010 Hb_005381_010--Hb_182167_010 Hb_077694_010 Hb_077694_010 Hb_005381_010--Hb_077694_010 Hb_001160_050 Hb_001160_050 Hb_000836_420--Hb_001160_050 Hb_000836_420--Hb_189208_060 Hb_002374_030 Hb_002374_030 Hb_000836_420--Hb_002374_030 Hb_000836_420--Hb_121540_010 Hb_003078_070 Hb_003078_070 Hb_000836_420--Hb_003078_070 Hb_121540_010--Hb_003060_150 Hb_121540_010--Hb_000069_530 Hb_028486_010 Hb_028486_010 Hb_121540_010--Hb_028486_010 Hb_121540_010--Hb_077694_010 Hb_003060_150--Hb_000069_530 Hb_003060_150--Hb_028486_010 Hb_009252_090 Hb_009252_090 Hb_003060_150--Hb_009252_090 Hb_115962_010 Hb_115962_010 Hb_000035_140--Hb_115962_010 Hb_000035_140--Hb_189208_060 Hb_000035_140--Hb_001160_050 Hb_004551_010 Hb_004551_010 Hb_000035_140--Hb_004551_010 Hb_012496_020 Hb_012496_020 Hb_000035_140--Hb_012496_020 Hb_189208_060--Hb_001160_050 Hb_189208_060--Hb_002374_030 Hb_011794_050 Hb_011794_050 Hb_189208_060--Hb_011794_050 Hb_000152_410 Hb_000152_410 Hb_189208_060--Hb_000152_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.91453 6.88878 2.08289 0.0179394 0.0167675
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0217714 0.0342611 0 0.21121 1.08711

CAGE analysis