Hb_001660_110

Information

Type -
Description -
Location Contig1660: 102958-115601
Sequence    

Annotation

kegg
ID rcu:RCOM_1330250
description amino acid transporter, putative
nr
ID XP_002521774.1
description amino acid transporter, putative [Ricinus communis]
swissprot
ID O80592
description Amino acid permease 8 OS=Arabidopsis thaliana GN=AAP8 PE=1 SV=1
trembl
ID B9S705
description Amino acid transporter, putative OS=Ricinus communis GN=RCOM_1330250 PE=4 SV=1
Gene Ontology
ID GO:0016021
description amino acid permease 8-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001660_110 0.0 - - amino acid transporter, putative [Ricinus communis]
2 Hb_006277_040 0.0002237152 - - PREDICTED: sodium-dependent phosphate transporter 1-like [Jatropha curcas]
3 Hb_001973_020 0.0007800495 - - -
4 Hb_000853_320 0.0010523722 - - -
5 Hb_002292_060 0.0016772158 - - PREDICTED: uncharacterized protein LOC101496717 [Cicer arietinum]
6 Hb_003841_010 0.0026976212 - - -
7 Hb_128935_010 0.0029885578 - - E3 ubiquitin-protein ligase UPL5 [Glycine soja]
8 Hb_000235_020 0.0034966269 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001545_090 0.0074566228 - - PREDICTED: uncharacterized protein LOC103874823 [Brassica rapa]
10 Hb_001158_210 0.010044214 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002909_030 0.0121129366 transcription factor TF Family: C2H2 hypothetical protein RCOM_1270600 [Ricinus communis]
12 Hb_001343_070 0.0122949438 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62680, mitochondrial-like [Jatropha curcas]
13 Hb_000733_140 0.015807773 - - PREDICTED: ras-related protein Rab2BV-like [Jatropha curcas]
14 Hb_001689_060 0.0181798343 - - PREDICTED: uncharacterized protein LOC103846154 [Brassica rapa]
15 Hb_004669_010 0.019945384 - - hypothetical protein JCGZ_26481 [Jatropha curcas]
16 Hb_002918_100 0.0221728402 - - hypothetical protein JCGZ_21466 [Jatropha curcas]
17 Hb_000032_110 0.02229182 - - nadhp hc toxin reductase, putative [Ricinus communis]
18 Hb_001205_260 0.0232995944 - - DWNN domain isoform 2 [Theobroma cacao]
19 Hb_023930_010 0.02414037 - - hypothetical protein RCOM_0641040 [Ricinus communis]
20 Hb_028447_010 0.0248633016 - - hypothetical protein RCOM_1967580 [Ricinus communis]

Gene co-expression network

sample Hb_001660_110 Hb_001660_110 Hb_006277_040 Hb_006277_040 Hb_001660_110--Hb_006277_040 Hb_001973_020 Hb_001973_020 Hb_001660_110--Hb_001973_020 Hb_000853_320 Hb_000853_320 Hb_001660_110--Hb_000853_320 Hb_002292_060 Hb_002292_060 Hb_001660_110--Hb_002292_060 Hb_003841_010 Hb_003841_010 Hb_001660_110--Hb_003841_010 Hb_128935_010 Hb_128935_010 Hb_001660_110--Hb_128935_010 Hb_006277_040--Hb_001973_020 Hb_006277_040--Hb_000853_320 Hb_006277_040--Hb_002292_060 Hb_006277_040--Hb_003841_010 Hb_006277_040--Hb_128935_010 Hb_001973_020--Hb_000853_320 Hb_001973_020--Hb_002292_060 Hb_000235_020 Hb_000235_020 Hb_001973_020--Hb_000235_020 Hb_001973_020--Hb_003841_010 Hb_000853_320--Hb_002292_060 Hb_000853_320--Hb_003841_010 Hb_000853_320--Hb_128935_010 Hb_002292_060--Hb_003841_010 Hb_002292_060--Hb_128935_010 Hb_003841_010--Hb_128935_010 Hb_128935_010--Hb_001973_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0108468 0.0248569 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis