Hb_001660_130

Information

Type -
Description -
Location Contig1660: 131612-133879
Sequence    

Annotation

kegg
ID pop:POPTR_0019s10710g
description POPTRDRAFT_780575; hypothetical protein
nr
ID XP_012079731.1
description PREDICTED: serine/threonine-protein kinase-like protein CCR4 [Jatropha curcas]
swissprot
ID Q9FIJ6
description Serine/threonine-protein kinase-like protein CCR4 OS=Arabidopsis thaliana GN=CCR4 PE=1 SV=1
trembl
ID B9IQE1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s10710g PE=3 SV=1
Gene Ontology
ID GO:0000166
description serine threonine-protein kinase-like protein ccr4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001660_130 0.0 - - PREDICTED: serine/threonine-protein kinase-like protein CCR4 [Jatropha curcas]
2 Hb_002783_130 0.0811385347 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic-like [Jatropha curcas]
3 Hb_004393_030 0.0901624155 - - CBL-interacting protein kinase 6 [Populus trichocarpa]
4 Hb_021254_020 0.0915624935 - - calmodulin binding protein, putative [Ricinus communis]
5 Hb_000402_180 0.1049783277 - - PREDICTED: uncharacterized protein LOC105644975 [Jatropha curcas]
6 Hb_008810_030 0.1051771868 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
7 Hb_012799_040 0.1089869656 - - PREDICTED: transmembrane ascorbate ferrireductase 1 [Jatropha curcas]
8 Hb_134022_010 0.1090161557 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
9 Hb_000985_140 0.1146396433 - - PREDICTED: uncharacterized protein LOC105643381 isoform X3 [Jatropha curcas]
10 Hb_003078_070 0.1152271121 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At3g25290 [Jatropha curcas]
11 Hb_073171_050 0.1207271892 transcription factor TF Family: MYB-related PREDICTED: myb-like protein H [Jatropha curcas]
12 Hb_000032_090 0.1243927269 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001623_410 0.1296172479 - - PREDICTED: beta-amylase 1, chloroplastic [Jatropha curcas]
14 Hb_000656_260 0.1304143212 - - PREDICTED: uncharacterized protein LOC105631376 [Jatropha curcas]
15 Hb_000156_080 0.13184109 - - Potassium channel KAT2, putative [Ricinus communis]
16 Hb_036492_020 0.1326438858 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
17 Hb_000172_410 0.1348076074 - - metal ion binding protein, putative [Ricinus communis]
18 Hb_007007_030 0.1351240743 - - conserved hypothetical protein [Ricinus communis]
19 Hb_070613_010 0.1355829429 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
20 Hb_007254_050 0.1361718791 - - PREDICTED: U-box domain-containing protein 28-like [Jatropha curcas]

Gene co-expression network

sample Hb_001660_130 Hb_001660_130 Hb_002783_130 Hb_002783_130 Hb_001660_130--Hb_002783_130 Hb_004393_030 Hb_004393_030 Hb_001660_130--Hb_004393_030 Hb_021254_020 Hb_021254_020 Hb_001660_130--Hb_021254_020 Hb_000402_180 Hb_000402_180 Hb_001660_130--Hb_000402_180 Hb_008810_030 Hb_008810_030 Hb_001660_130--Hb_008810_030 Hb_012799_040 Hb_012799_040 Hb_001660_130--Hb_012799_040 Hb_070613_010 Hb_070613_010 Hb_002783_130--Hb_070613_010 Hb_000418_060 Hb_000418_060 Hb_002783_130--Hb_000418_060 Hb_004109_150 Hb_004109_150 Hb_002783_130--Hb_004109_150 Hb_006002_020 Hb_006002_020 Hb_002783_130--Hb_006002_020 Hb_134022_010 Hb_134022_010 Hb_002783_130--Hb_134022_010 Hb_004393_030--Hb_008810_030 Hb_004393_030--Hb_021254_020 Hb_000032_090 Hb_000032_090 Hb_004393_030--Hb_000032_090 Hb_000985_140 Hb_000985_140 Hb_004393_030--Hb_000985_140 Hb_007007_030 Hb_007007_030 Hb_004393_030--Hb_007007_030 Hb_004109_240 Hb_004109_240 Hb_021254_020--Hb_004109_240 Hb_021254_020--Hb_008810_030 Hb_003078_070 Hb_003078_070 Hb_021254_020--Hb_003078_070 Hb_021254_020--Hb_000985_140 Hb_036492_020 Hb_036492_020 Hb_000402_180--Hb_036492_020 Hb_000402_180--Hb_134022_010 Hb_003929_040 Hb_003929_040 Hb_000402_180--Hb_003929_040 Hb_000402_180--Hb_070613_010 Hb_000402_180--Hb_008810_030 Hb_008810_030--Hb_134022_010 Hb_004899_360 Hb_004899_360 Hb_008810_030--Hb_004899_360 Hb_008810_030--Hb_000032_090 Hb_008810_030--Hb_004109_240 Hb_000656_260 Hb_000656_260 Hb_012799_040--Hb_000656_260 Hb_012799_040--Hb_000032_090 Hb_012799_040--Hb_004393_030 Hb_012799_040--Hb_036492_020 Hb_029584_110 Hb_029584_110 Hb_012799_040--Hb_029584_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0601861 26.0825 18.3979 10.0317 0 0.102227
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0982388 0.602944 0.264688 1.06904 8.22915

CAGE analysis