Hb_001662_050

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig1662: 77699-79312
Sequence    

Annotation

kegg
ID rcu:RCOM_0024480
description Disease resistance protein RPM1, putative
nr
ID XP_002527910.1
description Disease resistance protein RPM1, putative [Ricinus communis]
swissprot
ID Q8W3K3
description Putative disease resistance protein At1g58400 OS=Arabidopsis thaliana GN=At1g58400 PE=3 SV=1
trembl
ID B9SPJ1
description Disease resistance protein RPM1, putative OS=Ricinus communis GN=RCOM_0024480 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15326: 78011-78724 , PASA_asmbl_15327: 78918-79459
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001662_050 0.0 desease resistance Gene Name: NB-ARC Disease resistance protein RPM1, putative [Ricinus communis]
2 Hb_000330_060 0.1061678971 - - PREDICTED: adenosine kinase [Jatropha curcas]
3 Hb_001307_240 0.1136947629 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR2 isoform X2 [Jatropha curcas]
4 Hb_001141_310 0.1154783637 - - PREDICTED: uncharacterized protein LOC105632212 [Jatropha curcas]
5 Hb_000455_130 0.1177732182 - - PREDICTED: aspartic proteinase A1-like isoform X1 [Jatropha curcas]
6 Hb_001160_070 0.1208562053 - - PREDICTED: uncharacterized protein LOC105632163 [Jatropha curcas]
7 Hb_005215_020 0.1216502446 transcription factor TF Family: MYB PREDICTED: transcription factor MYB44 [Jatropha curcas]
8 Hb_000085_450 0.1232133483 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 20 [Jatropha curcas]
9 Hb_000258_110 0.125836739 - - PREDICTED: probable apyrase 6 isoform X1 [Jatropha curcas]
10 Hb_000238_030 0.1261152784 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_001488_220 0.1261750664 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
12 Hb_086063_020 0.1275553999 transcription factor TF Family: SNF2 PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [Jatropha curcas]
13 Hb_001552_030 0.1284129257 - - PREDICTED: galactoside 2-alpha-L-fucosyltransferase-like isoform X1 [Jatropha curcas]
14 Hb_019840_030 0.1289937569 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
15 Hb_102698_010 0.1301576724 - - PREDICTED: vacuolar cation/proton exchanger 5-like isoform X1 [Jatropha curcas]
16 Hb_000215_300 0.1327541966 - - mitochondrial processing peptidase alpha subunit, putative [Ricinus communis]
17 Hb_121089_030 0.1334752903 - - PREDICTED: dynamin-related protein 5A [Jatropha curcas]
18 Hb_002995_040 0.1335269409 - - PREDICTED: probable serine/threonine-protein kinase dyrk1 isoform X1 [Jatropha curcas]
19 Hb_004125_130 0.134585336 - - PREDICTED: uncharacterized protein LOC105632153 [Jatropha curcas]
20 Hb_003020_100 0.1350136502 - - PREDICTED: transcription initiation factor IIA large subunit [Jatropha curcas]

Gene co-expression network

sample Hb_001662_050 Hb_001662_050 Hb_000330_060 Hb_000330_060 Hb_001662_050--Hb_000330_060 Hb_001307_240 Hb_001307_240 Hb_001662_050--Hb_001307_240 Hb_001141_310 Hb_001141_310 Hb_001662_050--Hb_001141_310 Hb_000455_130 Hb_000455_130 Hb_001662_050--Hb_000455_130 Hb_001160_070 Hb_001160_070 Hb_001662_050--Hb_001160_070 Hb_005215_020 Hb_005215_020 Hb_001662_050--Hb_005215_020 Hb_000116_030 Hb_000116_030 Hb_000330_060--Hb_000116_030 Hb_016347_020 Hb_016347_020 Hb_000330_060--Hb_016347_020 Hb_000215_300 Hb_000215_300 Hb_000330_060--Hb_000215_300 Hb_001579_330 Hb_001579_330 Hb_000330_060--Hb_001579_330 Hb_002686_080 Hb_002686_080 Hb_000330_060--Hb_002686_080 Hb_000238_040 Hb_000238_040 Hb_000330_060--Hb_000238_040 Hb_001558_040 Hb_001558_040 Hb_001307_240--Hb_001558_040 Hb_004837_280 Hb_004837_280 Hb_001307_240--Hb_004837_280 Hb_002007_260 Hb_002007_260 Hb_001307_240--Hb_002007_260 Hb_001552_030 Hb_001552_030 Hb_001307_240--Hb_001552_030 Hb_001085_290 Hb_001085_290 Hb_001307_240--Hb_001085_290 Hb_000017_230 Hb_000017_230 Hb_001307_240--Hb_000017_230 Hb_000258_110 Hb_000258_110 Hb_001141_310--Hb_000258_110 Hb_015026_130 Hb_015026_130 Hb_001141_310--Hb_015026_130 Hb_121089_030 Hb_121089_030 Hb_001141_310--Hb_121089_030 Hb_086063_020 Hb_086063_020 Hb_001141_310--Hb_086063_020 Hb_188063_050 Hb_188063_050 Hb_001141_310--Hb_188063_050 Hb_001141_310--Hb_001552_030 Hb_019840_030 Hb_019840_030 Hb_000455_130--Hb_019840_030 Hb_000321_090 Hb_000321_090 Hb_000455_130--Hb_000321_090 Hb_006478_030 Hb_006478_030 Hb_000455_130--Hb_006478_030 Hb_001221_180 Hb_001221_180 Hb_000455_130--Hb_001221_180 Hb_007747_170 Hb_007747_170 Hb_000455_130--Hb_007747_170 Hb_080147_050 Hb_080147_050 Hb_000455_130--Hb_080147_050 Hb_000334_260 Hb_000334_260 Hb_001160_070--Hb_000334_260 Hb_002995_040 Hb_002995_040 Hb_001160_070--Hb_002995_040 Hb_001497_060 Hb_001497_060 Hb_001160_070--Hb_001497_060 Hb_083799_010 Hb_083799_010 Hb_001160_070--Hb_083799_010 Hb_001160_070--Hb_001307_240 Hb_002836_100 Hb_002836_100 Hb_001160_070--Hb_002836_100 Hb_006006_040 Hb_006006_040 Hb_005215_020--Hb_006006_040 Hb_000085_450 Hb_000085_450 Hb_005215_020--Hb_000085_450 Hb_000089_180 Hb_000089_180 Hb_005215_020--Hb_000089_180 Hb_007839_020 Hb_007839_020 Hb_005215_020--Hb_007839_020 Hb_000656_150 Hb_000656_150 Hb_005215_020--Hb_000656_150 Hb_001328_080 Hb_001328_080 Hb_005215_020--Hb_001328_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.96201 1.3826 1.436 2.21286 0.904603 0.646705
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.14866 0.406671 0.680984 2.1713 1.51693

CAGE analysis