Hb_001662_100

Information

Type -
Description -
Location Contig1662: 106598-115750
Sequence    

Annotation

kegg
ID tcc:TCM_000116
description ACT-like protein tyrosine kinase family protein
nr
ID XP_012065330.1
description PREDICTED: serine/threonine-protein kinase EDR1-like [Jatropha curcas]
swissprot
ID Q2MHE4
description Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1
trembl
ID A0A067L5J7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22338 PE=4 SV=1
Gene Ontology
ID GO:0004713
description probable serine threonine-protein kinase drkd

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001662_100 0.0 - - PREDICTED: serine/threonine-protein kinase EDR1-like [Jatropha curcas]
2 Hb_002414_050 0.0504155965 - - hypothetical protein CICLE_v10000243mg [Citrus clementina]
3 Hb_009569_040 0.0559567553 - - PREDICTED: uncharacterized protein LOC105635573 [Jatropha curcas]
4 Hb_002883_030 0.0627626059 - - PREDICTED: uncharacterized protein LOC105638222 [Jatropha curcas]
5 Hb_003544_160 0.0673115758 - - -
6 Hb_000787_160 0.0692115988 - - PREDICTED: GDP-mannose transporter GONST1 isoform X1 [Jatropha curcas]
7 Hb_003878_150 0.069696041 - - PREDICTED: GPI mannosyltransferase 3 [Jatropha curcas]
8 Hb_005725_130 0.0720448645 - - PREDICTED: uncharacterized protein KIAA0930 homolog isoform X2 [Jatropha curcas]
9 Hb_000300_270 0.0743106054 - - cationic amino acid transporter, putative [Ricinus communis]
10 Hb_000022_020 0.075993882 - - hypothetical protein CICLE_v10020565mg [Citrus clementina]
11 Hb_109000_020 0.0768774995 - - PREDICTED: uncharacterized protein LOC105633730 [Jatropha curcas]
12 Hb_004452_110 0.0771516723 - - PREDICTED: uncharacterized protein LOC105639575 isoform X1 [Jatropha curcas]
13 Hb_000256_150 0.0783195715 - - PREDICTED: trafficking protein particle complex II-specific subunit 120 homolog [Jatropha curcas]
14 Hb_000049_020 0.0784475744 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
15 Hb_000345_160 0.0800876347 - - PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Jatropha curcas]
16 Hb_000684_210 0.0839566582 - - PREDICTED: uncharacterized protein LOC105642177 [Jatropha curcas]
17 Hb_002897_090 0.0844613301 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004668_090 0.0849957154 - - PREDICTED: uncharacterized protein LOC105630440 [Jatropha curcas]
19 Hb_011224_050 0.085486563 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Populus euphratica]
20 Hb_000004_020 0.0855664309 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001662_100 Hb_001662_100 Hb_002414_050 Hb_002414_050 Hb_001662_100--Hb_002414_050 Hb_009569_040 Hb_009569_040 Hb_001662_100--Hb_009569_040 Hb_002883_030 Hb_002883_030 Hb_001662_100--Hb_002883_030 Hb_003544_160 Hb_003544_160 Hb_001662_100--Hb_003544_160 Hb_000787_160 Hb_000787_160 Hb_001662_100--Hb_000787_160 Hb_003878_150 Hb_003878_150 Hb_001662_100--Hb_003878_150 Hb_002414_050--Hb_003544_160 Hb_000022_020 Hb_000022_020 Hb_002414_050--Hb_000022_020 Hb_003517_040 Hb_003517_040 Hb_002414_050--Hb_003517_040 Hb_004452_110 Hb_004452_110 Hb_002414_050--Hb_004452_110 Hb_056691_060 Hb_056691_060 Hb_002414_050--Hb_056691_060 Hb_000256_150 Hb_000256_150 Hb_009569_040--Hb_000256_150 Hb_005725_130 Hb_005725_130 Hb_009569_040--Hb_005725_130 Hb_000049_020 Hb_000049_020 Hb_009569_040--Hb_000049_020 Hb_007481_010 Hb_007481_010 Hb_009569_040--Hb_007481_010 Hb_009569_040--Hb_002414_050 Hb_000345_160 Hb_000345_160 Hb_002883_030--Hb_000345_160 Hb_000300_270 Hb_000300_270 Hb_002883_030--Hb_000300_270 Hb_002897_090 Hb_002897_090 Hb_002883_030--Hb_002897_090 Hb_002883_030--Hb_000049_020 Hb_004037_020 Hb_004037_020 Hb_002883_030--Hb_004037_020 Hb_004679_030 Hb_004679_030 Hb_003544_160--Hb_004679_030 Hb_002768_060 Hb_002768_060 Hb_003544_160--Hb_002768_060 Hb_001876_010 Hb_001876_010 Hb_003544_160--Hb_001876_010 Hb_000359_210 Hb_000359_210 Hb_003544_160--Hb_000359_210 Hb_004102_170 Hb_004102_170 Hb_000787_160--Hb_004102_170 Hb_000787_160--Hb_000345_160 Hb_005015_060 Hb_005015_060 Hb_000787_160--Hb_005015_060 Hb_000322_080 Hb_000322_080 Hb_000787_160--Hb_000322_080 Hb_004705_170 Hb_004705_170 Hb_000787_160--Hb_004705_170 Hb_109000_020 Hb_109000_020 Hb_003878_150--Hb_109000_020 Hb_003878_150--Hb_005725_130 Hb_003878_150--Hb_000256_150 Hb_003883_060 Hb_003883_060 Hb_003878_150--Hb_003883_060 Hb_001195_400 Hb_001195_400 Hb_003878_150--Hb_001195_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.68816 5.96919 5.75178 13.1504 5.28577 8.43588
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.75086 6.07837 4.63515 8.66564 11.3329

CAGE analysis