Hb_001662_140

Information

Type -
Description -
Location Contig1662: 139476-143279
Sequence    

Annotation

kegg
ID pop:POPTR_0007s09310g
description hypothetical protein
nr
ID XP_012065323.1
description PREDICTED: ankyrin repeat domain-containing protein, chloroplastic [Jatropha curcas]
swissprot
ID Q05753
description Ankyrin repeat domain-containing protein, chloroplastic OS=Arabidopsis thaliana GN=AKRP PE=1 SV=2
trembl
ID A0A067L5J2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22333 PE=4 SV=1
Gene Ontology
ID GO:0097159
description ankyrin repeat domain-containing chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15339: 139365-142783
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001662_140 0.0 - - PREDICTED: ankyrin repeat domain-containing protein, chloroplastic [Jatropha curcas]
2 Hb_000331_130 0.0693086024 transcription factor TF Family: Trihelix conserved hypothetical protein [Ricinus communis]
3 Hb_001660_120 0.0706627647 - - PREDICTED: adenylate kinase, chloroplastic [Jatropha curcas]
4 Hb_031284_010 0.0788477972 - - PREDICTED: uncharacterized protein LOC105633543 [Jatropha curcas]
5 Hb_003038_200 0.0834974123 desease resistance Gene Name: MMR_HSR1 PREDICTED: GTPase Era, mitochondrial [Jatropha curcas]
6 Hb_002233_130 0.0896234594 - - transporter, putative [Ricinus communis]
7 Hb_008059_010 0.0912485413 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04810, chloroplastic [Jatropha curcas]
8 Hb_007283_010 0.0935652547 - - PREDICTED: pre-mRNA-processing protein 40C isoform X1 [Jatropha curcas]
9 Hb_000834_200 0.0946209213 - - PREDICTED: splicing factor, arginine/serine-rich 19 [Jatropha curcas]
10 Hb_031284_070 0.0961892753 - - PREDICTED: translation initiation factor IF-3, chloroplastic [Jatropha curcas]
11 Hb_025557_050 0.0978497117 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74630 [Jatropha curcas]
12 Hb_004310_140 0.0987994875 - - PREDICTED: glycine--tRNA ligase 2, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
13 Hb_005288_070 0.0994202506 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
14 Hb_013405_080 0.0997434853 - - PREDICTED: proline--tRNA ligase [Jatropha curcas]
15 Hb_001492_030 0.1015772092 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic [Jatropha curcas]
16 Hb_000205_260 0.1031288971 transcription factor TF Family: SNF2 hypothetical protein JCGZ_23567 [Jatropha curcas]
17 Hb_000221_140 0.1033270419 - - PREDICTED: serine--tRNA ligase, mitochondrial [Jatropha curcas]
18 Hb_003225_020 0.1035114969 transcription factor TF Family: HB PREDICTED: homeobox protein HAT3.1 [Jatropha curcas]
19 Hb_002686_240 0.1038797208 - - Thioredoxin, putative [Ricinus communis]
20 Hb_000349_240 0.1039617939 - - PREDICTED: probable aminotransferase ACS10 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001662_140 Hb_001662_140 Hb_000331_130 Hb_000331_130 Hb_001662_140--Hb_000331_130 Hb_001660_120 Hb_001660_120 Hb_001662_140--Hb_001660_120 Hb_031284_010 Hb_031284_010 Hb_001662_140--Hb_031284_010 Hb_003038_200 Hb_003038_200 Hb_001662_140--Hb_003038_200 Hb_002233_130 Hb_002233_130 Hb_001662_140--Hb_002233_130 Hb_008059_010 Hb_008059_010 Hb_001662_140--Hb_008059_010 Hb_000331_130--Hb_001660_120 Hb_007035_040 Hb_007035_040 Hb_000331_130--Hb_007035_040 Hb_004884_180 Hb_004884_180 Hb_000331_130--Hb_004884_180 Hb_000363_060 Hb_000363_060 Hb_000331_130--Hb_000363_060 Hb_000331_130--Hb_002233_130 Hb_013405_080 Hb_013405_080 Hb_001660_120--Hb_013405_080 Hb_001660_120--Hb_000363_060 Hb_000221_140 Hb_000221_140 Hb_001660_120--Hb_000221_140 Hb_033312_010 Hb_033312_010 Hb_001660_120--Hb_033312_010 Hb_031284_010--Hb_008059_010 Hb_000115_280 Hb_000115_280 Hb_031284_010--Hb_000115_280 Hb_003186_020 Hb_003186_020 Hb_031284_010--Hb_003186_020 Hb_138435_010 Hb_138435_010 Hb_031284_010--Hb_138435_010 Hb_000120_210 Hb_000120_210 Hb_031284_010--Hb_000120_210 Hb_000457_230 Hb_000457_230 Hb_031284_010--Hb_000457_230 Hb_071188_010 Hb_071188_010 Hb_003038_200--Hb_071188_010 Hb_004310_140 Hb_004310_140 Hb_003038_200--Hb_004310_140 Hb_000679_020 Hb_000679_020 Hb_003038_200--Hb_000679_020 Hb_003038_200--Hb_000221_140 Hb_000174_170 Hb_000174_170 Hb_003038_200--Hb_000174_170 Hb_001244_150 Hb_001244_150 Hb_002233_130--Hb_001244_150 Hb_000260_560 Hb_000260_560 Hb_002233_130--Hb_000260_560 Hb_004324_330 Hb_004324_330 Hb_002233_130--Hb_004324_330 Hb_007305_020 Hb_007305_020 Hb_002233_130--Hb_007305_020 Hb_002233_130--Hb_007035_040 Hb_002328_040 Hb_002328_040 Hb_002233_130--Hb_002328_040 Hb_007765_100 Hb_007765_100 Hb_008059_010--Hb_007765_100 Hb_008059_010--Hb_000115_280 Hb_008059_010--Hb_000457_230 Hb_000836_410 Hb_000836_410 Hb_008059_010--Hb_000836_410 Hb_000205_260 Hb_000205_260 Hb_008059_010--Hb_000205_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.5669 5.71692 8.7625 3.20674 6.4624 6.40266
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.08801 4.79947 2.32349 4.15773 12.3667

CAGE analysis