Hb_001662_150

Information

Type -
Description -
Location Contig1662: 144419-148481
Sequence    

Annotation

kegg
ID mtr:MTR_5g023060
description Scaffold attachment factor B1
nr
ID XP_003612260.1
description Scaffold attachment factor B1 [Medicago truncatula]
swissprot
ID Q84TH4
description Serine/arginine-rich splicing factor SR45a OS=Arabidopsis thaliana GN=SR45A PE=1 SV=1
trembl
ID G7JYS1
description RNA-binding (RRM/RBD/RNP motif) family protein OS=Medicago truncatula GN=MTR_5g023060 PE=4 SV=1
Gene Ontology
ID GO:0000166
description serine arginine-rich splicing factor sr45a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15341: 144447-148462 , PASA_asmbl_15343: 144487-148294
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001662_150 0.0 - - Scaffold attachment factor B1 [Medicago truncatula]
2 Hb_007163_070 0.0653593352 - - PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform X1 [Jatropha curcas]
3 Hb_003226_140 0.0654144307 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
4 Hb_000329_200 0.0667079834 - - PREDICTED: uncharacterized protein LOC105639316 [Jatropha curcas]
5 Hb_005697_060 0.0676898846 transcription factor TF Family: HB PREDICTED: pathogenesis-related homeodomain protein isoform X1 [Jatropha curcas]
6 Hb_001157_020 0.0689059573 - - PREDICTED: uncharacterized protein LOC105649844 isoform X1 [Jatropha curcas]
7 Hb_005306_170 0.0715473265 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
8 Hb_028227_020 0.072414205 - - PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB isoform X1 [Jatropha curcas]
9 Hb_005847_060 0.0752322972 - - hypothetical protein POPTR_0006s02920g [Populus trichocarpa]
10 Hb_012725_050 0.0756301216 transcription factor TF Family: SET set domain protein, putative [Ricinus communis]
11 Hb_000656_240 0.0758556822 - - proteasome subunit alpha type, putative [Ricinus communis]
12 Hb_001006_190 0.0782355058 - - PREDICTED: uncharacterized protein LOC105634201 [Jatropha curcas]
13 Hb_000059_370 0.0786627171 - - PREDICTED: U6 snRNA phosphodiesterase [Jatropha curcas]
14 Hb_032264_070 0.0800996586 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Jatropha curcas]
15 Hb_001105_030 0.0803236469 - - PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220 [Jatropha curcas]
16 Hb_001633_050 0.0836129283 - - PREDICTED: histone H2A.Z-specific chaperone CHZ1 [Jatropha curcas]
17 Hb_000146_070 0.0853801269 - - PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Jatropha curcas]
18 Hb_002534_150 0.0867883835 - - catalytic, putative [Ricinus communis]
19 Hb_001821_010 0.087382878 - - PREDICTED: uncharacterized protein C9orf78 [Jatropha curcas]
20 Hb_015934_070 0.0880276096 - - PREDICTED: ribose-phosphate pyrophosphokinase 4 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001662_150 Hb_001662_150 Hb_007163_070 Hb_007163_070 Hb_001662_150--Hb_007163_070 Hb_003226_140 Hb_003226_140 Hb_001662_150--Hb_003226_140 Hb_000329_200 Hb_000329_200 Hb_001662_150--Hb_000329_200 Hb_005697_060 Hb_005697_060 Hb_001662_150--Hb_005697_060 Hb_001157_020 Hb_001157_020 Hb_001662_150--Hb_001157_020 Hb_005306_170 Hb_005306_170 Hb_001662_150--Hb_005306_170 Hb_007163_070--Hb_005697_060 Hb_000465_090 Hb_000465_090 Hb_007163_070--Hb_000465_090 Hb_028227_020 Hb_028227_020 Hb_007163_070--Hb_028227_020 Hb_003942_020 Hb_003942_020 Hb_007163_070--Hb_003942_020 Hb_002534_150 Hb_002534_150 Hb_007163_070--Hb_002534_150 Hb_002303_070 Hb_002303_070 Hb_003226_140--Hb_002303_070 Hb_000215_110 Hb_000215_110 Hb_003226_140--Hb_000215_110 Hb_002473_130 Hb_002473_130 Hb_003226_140--Hb_002473_130 Hb_000468_060 Hb_000468_060 Hb_003226_140--Hb_000468_060 Hb_001599_040 Hb_001599_040 Hb_003226_140--Hb_001599_040 Hb_005357_080 Hb_005357_080 Hb_003226_140--Hb_005357_080 Hb_010361_010 Hb_010361_010 Hb_000329_200--Hb_010361_010 Hb_024650_070 Hb_024650_070 Hb_000329_200--Hb_024650_070 Hb_001604_060 Hb_001604_060 Hb_000329_200--Hb_001604_060 Hb_017225_020 Hb_017225_020 Hb_000329_200--Hb_017225_020 Hb_000656_240 Hb_000656_240 Hb_000329_200--Hb_000656_240 Hb_006120_070 Hb_006120_070 Hb_005697_060--Hb_006120_070 Hb_005697_060--Hb_028227_020 Hb_005697_060--Hb_000465_090 Hb_001534_120 Hb_001534_120 Hb_005697_060--Hb_001534_120 Hb_001157_020--Hb_028227_020 Hb_012725_050 Hb_012725_050 Hb_001157_020--Hb_012725_050 Hb_001105_030 Hb_001105_030 Hb_001157_020--Hb_001105_030 Hb_001821_010 Hb_001821_010 Hb_001157_020--Hb_001821_010 Hb_001140_370 Hb_001140_370 Hb_001157_020--Hb_001140_370 Hb_000815_320 Hb_000815_320 Hb_001157_020--Hb_000815_320 Hb_005306_170--Hb_012725_050 Hb_005306_170--Hb_028227_020 Hb_005306_170--Hb_001157_020 Hb_000329_140 Hb_000329_140 Hb_005306_170--Hb_000329_140 Hb_000486_010 Hb_000486_010 Hb_005306_170--Hb_000486_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
56.6647 23.4213 57.6127 38.3419 56.4056 69.4173
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
90.933 98.2026 56.9853 59.2771 49.8985

CAGE analysis