Hb_001663_040

Information

Type -
Description -
Location Contig1663: 29928-31411
Sequence    

Annotation

kegg
ID rcu:RCOM_1212010
description ubiquitin-protein ligase, putative
nr
ID KJB42657.1
description hypothetical protein B456_007G162000 [Gossypium raimondii]
swissprot
ID Q9SRR1
description F-box/LRR-repeat protein 12 OS=Arabidopsis thaliana GN=FBL12 PE=2 SV=1
trembl
ID A0A0D2PA67
description Gossypium raimondii chromosome 7, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_007G162000 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15352: 30082-30240
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001663_040 0.0 - - hypothetical protein B456_007G162000 [Gossypium raimondii]
2 Hb_003875_030 0.0840133502 - - PREDICTED: probable plastidic glucose transporter 1 [Jatropha curcas]
3 Hb_000181_350 0.0875160032 - - PREDICTED: uncharacterized protein LOC105111090 [Populus euphratica]
4 Hb_000638_070 0.0924346151 - - PREDICTED: protein trichome birefringence-like 14 [Jatropha curcas]
5 Hb_002392_010 0.0954118031 - - PREDICTED: apurinic endonuclease-redox protein isoform X4 [Jatropha curcas]
6 Hb_012573_050 0.0977539555 - - choline/ethanolamine kinase family protein [Populus trichocarpa]
7 Hb_000116_130 0.0979210508 - - PREDICTED: aspartic proteinase Asp1 [Jatropha curcas]
8 Hb_001369_790 0.1027423007 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic [Jatropha curcas]
9 Hb_003994_030 0.1037050573 - - PREDICTED: organic cation/carnitine transporter 7 [Jatropha curcas]
10 Hb_000789_120 0.1070097978 - - PREDICTED: derlin-1 isoform X1 [Jatropha curcas]
11 Hb_021943_090 0.1073282251 - - PREDICTED: probable methylenetetrahydrofolate reductase [Jatropha curcas]
12 Hb_097495_010 0.1074523205 - - PREDICTED: uncharacterized protein LOC105646805 isoform X2 [Jatropha curcas]
13 Hb_007192_030 0.1082817393 - - PREDICTED: manganese-dependent ADP-ribose/CDP-alcohol diphosphatase [Jatropha curcas]
14 Hb_000684_030 0.1082847942 - - syntaxin, putative [Ricinus communis]
15 Hb_001946_380 0.1085869227 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Jatropha curcas]
16 Hb_011606_020 0.1096465571 - - hypothetical protein CISIN_1g023687mg [Citrus sinensis]
17 Hb_121089_040 0.1096547486 - - PREDICTED: GDSL esterase/lipase At4g10955 [Jatropha curcas]
18 Hb_002110_100 0.1101548284 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Jatropha curcas]
19 Hb_000057_110 0.1114326755 - - PREDICTED: kinesin-13A [Jatropha curcas]
20 Hb_004257_010 0.1135600018 - - CMP-sialic acid transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_001663_040 Hb_001663_040 Hb_003875_030 Hb_003875_030 Hb_001663_040--Hb_003875_030 Hb_000181_350 Hb_000181_350 Hb_001663_040--Hb_000181_350 Hb_000638_070 Hb_000638_070 Hb_001663_040--Hb_000638_070 Hb_002392_010 Hb_002392_010 Hb_001663_040--Hb_002392_010 Hb_012573_050 Hb_012573_050 Hb_001663_040--Hb_012573_050 Hb_000116_130 Hb_000116_130 Hb_001663_040--Hb_000116_130 Hb_171718_010 Hb_171718_010 Hb_003875_030--Hb_171718_010 Hb_001946_380 Hb_001946_380 Hb_003875_030--Hb_001946_380 Hb_000585_110 Hb_000585_110 Hb_003875_030--Hb_000585_110 Hb_055690_010 Hb_055690_010 Hb_003875_030--Hb_055690_010 Hb_008375_010 Hb_008375_010 Hb_003875_030--Hb_008375_010 Hb_007101_110 Hb_007101_110 Hb_000181_350--Hb_007101_110 Hb_000057_110 Hb_000057_110 Hb_000181_350--Hb_000057_110 Hb_000200_300 Hb_000200_300 Hb_000181_350--Hb_000200_300 Hb_000684_030 Hb_000684_030 Hb_000181_350--Hb_000684_030 Hb_000062_330 Hb_000062_330 Hb_000181_350--Hb_000062_330 Hb_000665_180 Hb_000665_180 Hb_000638_070--Hb_000665_180 Hb_011486_060 Hb_011486_060 Hb_000638_070--Hb_011486_060 Hb_001976_030 Hb_001976_030 Hb_000638_070--Hb_001976_030 Hb_000395_110 Hb_000395_110 Hb_000638_070--Hb_000395_110 Hb_000417_390 Hb_000417_390 Hb_000638_070--Hb_000417_390 Hb_001946_390 Hb_001946_390 Hb_002392_010--Hb_001946_390 Hb_032920_070 Hb_032920_070 Hb_002392_010--Hb_032920_070 Hb_002110_100 Hb_002110_100 Hb_002392_010--Hb_002110_100 Hb_000185_220 Hb_000185_220 Hb_002392_010--Hb_000185_220 Hb_066842_010 Hb_066842_010 Hb_002392_010--Hb_066842_010 Hb_005601_040 Hb_005601_040 Hb_002392_010--Hb_005601_040 Hb_000244_180 Hb_000244_180 Hb_012573_050--Hb_000244_180 Hb_156850_100 Hb_156850_100 Hb_012573_050--Hb_156850_100 Hb_000721_030 Hb_000721_030 Hb_012573_050--Hb_000721_030 Hb_012573_050--Hb_000116_130 Hb_000167_110 Hb_000167_110 Hb_012573_050--Hb_000167_110 Hb_007975_060 Hb_007975_060 Hb_012573_050--Hb_007975_060 Hb_011606_020 Hb_011606_020 Hb_000116_130--Hb_011606_020 Hb_170138_010 Hb_170138_010 Hb_000116_130--Hb_170138_010 Hb_000077_150 Hb_000077_150 Hb_000116_130--Hb_000077_150 Hb_000107_430 Hb_000107_430 Hb_000116_130--Hb_000107_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.198391 0.153079 1.03403 1.34348 0.295189 0.344584
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.471054 0.655611 0.745787 0.558589 1.30434

CAGE analysis