Hb_001663_050

Information

Type -
Description -
Location Contig1663: 41181-44345
Sequence    

Annotation

kegg
ID rcu:RCOM_1211390
description XPA-binding protein, putative
nr
ID XP_012084290.1
description PREDICTED: GPN-loop GTPase 3 [Jatropha curcas]
swissprot
ID Q6CQA6
description GPN-loop GTPase 3 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=KLLA0D18557g PE=3 SV=2
trembl
ID A0A067LKG5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15055 PE=4 SV=1
Gene Ontology
ID GO:0016787
description gpn-loop gtpase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15356: 43981-44474 , PASA_asmbl_15357: 44012-44485
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001663_050 0.0 - - PREDICTED: GPN-loop GTPase 3 [Jatropha curcas]
2 Hb_086639_030 0.0431294477 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
3 Hb_012114_040 0.0610244374 - - DNA binding protein, putative [Ricinus communis]
4 Hb_034406_030 0.0738301513 - - PREDICTED: dihydroorotate dehydrogenase (quinone), mitochondrial [Musa acuminata subsp. malaccensis]
5 Hb_032208_060 0.0768553594 - - PREDICTED: constitutive photomorphogenesis protein 10 isoform X2 [Populus euphratica]
6 Hb_007416_320 0.0815389981 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005568_120 0.0821375935 - - Prephenate dehydratase [Hevea brasiliensis]
8 Hb_028515_010 0.0832479467 - - PREDICTED: protein DEFECTIVE IN MERISTEM SILENCING 3 isoform X1 [Jatropha curcas]
9 Hb_002878_020 0.0843956837 - - mitochondrial carrier protein, putative [Ricinus communis]
10 Hb_001545_170 0.0846256547 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
11 Hb_001507_040 0.0878634542 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002660_070 0.0882297343 - - PREDICTED: gamma carbonic anhydrase 1, mitochondrial [Eucalyptus grandis]
13 Hb_003349_090 0.0887268167 - - PREDICTED: diphthamide biosynthesis protein 2 [Jatropha curcas]
14 Hb_000373_130 0.0896180107 - - PREDICTED: protein FAM188A [Jatropha curcas]
15 Hb_011214_020 0.0904484595 - - PREDICTED: RNA-binding protein 5 isoform X1 [Jatropha curcas]
16 Hb_000175_060 0.0917121797 - - PREDICTED: uncharacterized protein LOC105634837 [Jatropha curcas]
17 Hb_012490_070 0.0917334967 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001633_210 0.0923231946 - - PREDICTED: RING finger protein 10 isoform X2 [Jatropha curcas]
19 Hb_003053_020 0.0938744694 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
20 Hb_005463_040 0.0944165947 - - signal transducer, putative [Ricinus communis]

Gene co-expression network

sample Hb_001663_050 Hb_001663_050 Hb_086639_030 Hb_086639_030 Hb_001663_050--Hb_086639_030 Hb_012114_040 Hb_012114_040 Hb_001663_050--Hb_012114_040 Hb_034406_030 Hb_034406_030 Hb_001663_050--Hb_034406_030 Hb_032208_060 Hb_032208_060 Hb_001663_050--Hb_032208_060 Hb_007416_320 Hb_007416_320 Hb_001663_050--Hb_007416_320 Hb_005568_120 Hb_005568_120 Hb_001663_050--Hb_005568_120 Hb_005463_040 Hb_005463_040 Hb_086639_030--Hb_005463_040 Hb_086639_030--Hb_007416_320 Hb_172932_010 Hb_172932_010 Hb_086639_030--Hb_172932_010 Hb_003053_020 Hb_003053_020 Hb_086639_030--Hb_003053_020 Hb_002878_020 Hb_002878_020 Hb_086639_030--Hb_002878_020 Hb_012114_040--Hb_005568_120 Hb_155764_010 Hb_155764_010 Hb_012114_040--Hb_155764_010 Hb_012114_040--Hb_032208_060 Hb_001519_050 Hb_001519_050 Hb_012114_040--Hb_001519_050 Hb_002061_040 Hb_002061_040 Hb_012114_040--Hb_002061_040 Hb_000069_420 Hb_000069_420 Hb_034406_030--Hb_000069_420 Hb_003994_260 Hb_003994_260 Hb_034406_030--Hb_003994_260 Hb_001902_140 Hb_001902_140 Hb_034406_030--Hb_001902_140 Hb_003787_010 Hb_003787_010 Hb_034406_030--Hb_003787_010 Hb_034406_030--Hb_007416_320 Hb_028515_010 Hb_028515_010 Hb_032208_060--Hb_028515_010 Hb_032208_060--Hb_005568_120 Hb_001481_140 Hb_001481_140 Hb_032208_060--Hb_001481_140 Hb_005883_100 Hb_005883_100 Hb_032208_060--Hb_005883_100 Hb_005618_170 Hb_005618_170 Hb_007416_320--Hb_005618_170 Hb_001633_210 Hb_001633_210 Hb_007416_320--Hb_001633_210 Hb_000058_060 Hb_000058_060 Hb_007416_320--Hb_000058_060 Hb_000062_220 Hb_000062_220 Hb_007416_320--Hb_000062_220 Hb_000876_070 Hb_000876_070 Hb_007416_320--Hb_000876_070 Hb_000120_470 Hb_000120_470 Hb_007416_320--Hb_000120_470 Hb_005568_120--Hb_028515_010 Hb_002676_090 Hb_002676_090 Hb_005568_120--Hb_002676_090 Hb_011173_050 Hb_011173_050 Hb_005568_120--Hb_011173_050 Hb_004567_120 Hb_004567_120 Hb_005568_120--Hb_004567_120 Hb_000373_130 Hb_000373_130 Hb_005568_120--Hb_000373_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.99378 6.30877 4.47886 7.0127 5.44519 7.37685
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.3408 18.6917 19.1581 13.1374 6.08647

CAGE analysis