Hb_001663_090

Information

Type -
Description -
Location Contig1663: 60326-60616
Sequence    

Annotation

kegg
ID rcu:RCOM_1211160
description ribonuclease t2, putative (EC:3.1.27.1)
nr
ID XP_002524554.1
description ribonuclease t2, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SEY5
description Ribonuclease t2, putative OS=Ricinus communis GN=RCOM_1211160 PE=3 SV=1
Gene Ontology
ID GO:0043231
description ribonuclease 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001663_090 0.0 - - ribonuclease t2, putative [Ricinus communis]
2 Hb_029622_090 0.0594302209 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 2-like [Jatropha curcas]
3 Hb_002676_110 0.0878875985 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase 2-like [Gossypium raimondii]
4 Hb_000028_330 0.0889187975 - - PREDICTED: mitogen-activated protein kinase kinase 9-like [Pyrus x bretschneideri]
5 Hb_002739_160 0.0921752052 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
6 Hb_000060_080 0.0993019301 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 2 protein, putative [Ricinus communis]
7 Hb_030827_080 0.1007007195 - - PREDICTED: uncharacterized protein LOC105648491 [Jatropha curcas]
8 Hb_002048_070 0.1025684899 - - hypothetical protein JCGZ_15146 [Jatropha curcas]
9 Hb_076771_010 0.106101802 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
10 Hb_008352_020 0.1067331526 - - hypothetical protein [Cecembia lonarensis]
11 Hb_010721_010 0.1078532634 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26-like [Populus euphratica]
12 Hb_145268_010 0.1118790325 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Jatropha curcas]
13 Hb_170632_010 0.1126864476 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
14 Hb_023386_060 0.1134003517 - - PREDICTED: putative glucuronosyltransferase PGSIP8 [Jatropha curcas]
15 Hb_004324_100 0.1145500006 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
16 Hb_010642_010 0.1178096481 - - PREDICTED: aquaporin TIP2-1 [Jatropha curcas]
17 Hb_011915_020 0.1184359137 - - PREDICTED: arogenate dehydratase/prephenate dehydratase 6, chloroplastic-like [Jatropha curcas]
18 Hb_000010_220 0.1184806691 - - PREDICTED: uncharacterized protein LOC105640277 [Jatropha curcas]
19 Hb_001198_160 0.1202421789 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
20 Hb_001610_070 0.1215616832 - - hypothetical protein MIMGU_mgv1a022867mg [Erythranthe guttata]

Gene co-expression network

sample Hb_001663_090 Hb_001663_090 Hb_029622_090 Hb_029622_090 Hb_001663_090--Hb_029622_090 Hb_002676_110 Hb_002676_110 Hb_001663_090--Hb_002676_110 Hb_000028_330 Hb_000028_330 Hb_001663_090--Hb_000028_330 Hb_002739_160 Hb_002739_160 Hb_001663_090--Hb_002739_160 Hb_000060_080 Hb_000060_080 Hb_001663_090--Hb_000060_080 Hb_030827_080 Hb_030827_080 Hb_001663_090--Hb_030827_080 Hb_029622_090--Hb_000028_330 Hb_002048_070 Hb_002048_070 Hb_029622_090--Hb_002048_070 Hb_011915_020 Hb_011915_020 Hb_029622_090--Hb_011915_020 Hb_021576_160 Hb_021576_160 Hb_029622_090--Hb_021576_160 Hb_004324_100 Hb_004324_100 Hb_029622_090--Hb_004324_100 Hb_076771_010 Hb_076771_010 Hb_002676_110--Hb_076771_010 Hb_002676_110--Hb_000060_080 Hb_004631_100 Hb_004631_100 Hb_002676_110--Hb_004631_100 Hb_010721_010 Hb_010721_010 Hb_002676_110--Hb_010721_010 Hb_070634_010 Hb_070634_010 Hb_002676_110--Hb_070634_010 Hb_001198_160 Hb_001198_160 Hb_000028_330--Hb_001198_160 Hb_001610_070 Hb_001610_070 Hb_000028_330--Hb_001610_070 Hb_006736_040 Hb_006736_040 Hb_000028_330--Hb_006736_040 Hb_001518_030 Hb_001518_030 Hb_000028_330--Hb_001518_030 Hb_026048_030 Hb_026048_030 Hb_000028_330--Hb_026048_030 Hb_002739_160--Hb_030827_080 Hb_153180_010 Hb_153180_010 Hb_002739_160--Hb_153180_010 Hb_010642_010 Hb_010642_010 Hb_002739_160--Hb_010642_010 Hb_008352_020 Hb_008352_020 Hb_002739_160--Hb_008352_020 Hb_001198_180 Hb_001198_180 Hb_002739_160--Hb_001198_180 Hb_170632_010 Hb_170632_010 Hb_000060_080--Hb_170632_010 Hb_001562_030 Hb_001562_030 Hb_000060_080--Hb_001562_030 Hb_000060_080--Hb_004631_100 Hb_000975_090 Hb_000975_090 Hb_000060_080--Hb_000975_090 Hb_030827_080--Hb_010642_010 Hb_030827_080--Hb_008352_020 Hb_030827_080--Hb_153180_010 Hb_030827_080--Hb_001198_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.237436 42.9628 33.9676 55.4868 0.175373 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 6.38561 4.35364

CAGE analysis