Hb_001663_110

Information

Type -
Description -
Location Contig1663: 67331-75015
Sequence    

Annotation

kegg
ID rcu:RCOM_0101820
description RNA binding protein, putative
nr
ID XP_002532456.1
description RNA binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T2I7
description RNA binding protein, putative OS=Ricinus communis GN=RCOM_0101820 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15360: 72365-75098
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001663_110 0.0 - - RNA binding protein, putative [Ricinus communis]
2 Hb_000976_270 0.0492472587 - - PREDICTED: uncharacterized protein LOC105646226 [Jatropha curcas]
3 Hb_004447_030 0.076652791 - - PREDICTED: glucose-induced degradation protein 4 homolog [Jatropha curcas]
4 Hb_000205_120 0.0810809361 - - PREDICTED: casein kinase I-like isoform X3 [Jatropha curcas]
5 Hb_000236_280 0.0814112939 - - PREDICTED: coiled-coil domain-containing protein 22 homolog isoform X1 [Jatropha curcas]
6 Hb_012305_070 0.0841830559 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005237_060 0.0847429506 transcription factor TF Family: ERF ERF/AP2 domain-containing transcription factor [Manihot esculenta]
8 Hb_001956_120 0.0867536796 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001504_150 0.0869165362 - - PREDICTED: DCN1-like protein 4 [Jatropha curcas]
10 Hb_005701_040 0.0879486389 - - cellular nucleic acid binding protein, putative [Ricinus communis]
11 Hb_001623_370 0.0879898863 - - conserved hypothetical protein [Ricinus communis]
12 Hb_010298_020 0.0890305102 - - PREDICTED: uncharacterized protein At2g02148 isoform X4 [Vitis vinifera]
13 Hb_000088_200 0.0899788907 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
14 Hb_004525_100 0.0899835874 - - hypothetical protein JCGZ_18418 [Jatropha curcas]
15 Hb_000175_390 0.0904273426 - - DNA-directed RNA polymerase III subunit F, putative [Ricinus communis]
16 Hb_000265_150 0.091210032 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
17 Hb_000529_080 0.0926453507 - - PREDICTED: uncharacterized protein LOC105641675 [Jatropha curcas]
18 Hb_001616_090 0.0930037455 - - PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X2 [Jatropha curcas]
19 Hb_000058_040 0.0935399885 - - PREDICTED: probable lipid-A-disaccharide synthase, mitochondrial [Jatropha curcas]
20 Hb_000209_090 0.0935585774 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]

Gene co-expression network

sample Hb_001663_110 Hb_001663_110 Hb_000976_270 Hb_000976_270 Hb_001663_110--Hb_000976_270 Hb_004447_030 Hb_004447_030 Hb_001663_110--Hb_004447_030 Hb_000205_120 Hb_000205_120 Hb_001663_110--Hb_000205_120 Hb_000236_280 Hb_000236_280 Hb_001663_110--Hb_000236_280 Hb_012305_070 Hb_012305_070 Hb_001663_110--Hb_012305_070 Hb_005237_060 Hb_005237_060 Hb_001663_110--Hb_005237_060 Hb_000976_270--Hb_000205_120 Hb_000209_090 Hb_000209_090 Hb_000976_270--Hb_000209_090 Hb_000976_270--Hb_004447_030 Hb_004525_100 Hb_004525_100 Hb_000976_270--Hb_004525_100 Hb_001956_120 Hb_001956_120 Hb_000976_270--Hb_001956_120 Hb_004447_030--Hb_000205_120 Hb_000347_080 Hb_000347_080 Hb_004447_030--Hb_000347_080 Hb_000265_150 Hb_000265_150 Hb_004447_030--Hb_000265_150 Hb_000529_080 Hb_000529_080 Hb_004447_030--Hb_000529_080 Hb_000205_120--Hb_000529_080 Hb_000205_120--Hb_000265_150 Hb_008887_050 Hb_008887_050 Hb_000205_120--Hb_008887_050 Hb_010968_010 Hb_010968_010 Hb_000205_120--Hb_010968_010 Hb_004241_070 Hb_004241_070 Hb_000236_280--Hb_004241_070 Hb_000104_080 Hb_000104_080 Hb_000236_280--Hb_000104_080 Hb_073171_080 Hb_073171_080 Hb_000236_280--Hb_073171_080 Hb_000088_200 Hb_000088_200 Hb_000236_280--Hb_000088_200 Hb_004044_020 Hb_004044_020 Hb_000236_280--Hb_004044_020 Hb_000236_280--Hb_004525_100 Hb_000684_420 Hb_000684_420 Hb_012305_070--Hb_000684_420 Hb_000645_150 Hb_000645_150 Hb_012305_070--Hb_000645_150 Hb_000186_280 Hb_000186_280 Hb_012305_070--Hb_000186_280 Hb_001014_010 Hb_001014_010 Hb_012305_070--Hb_001014_010 Hb_000236_370 Hb_000236_370 Hb_012305_070--Hb_000236_370 Hb_003384_030 Hb_003384_030 Hb_012305_070--Hb_003384_030 Hb_005237_060--Hb_000684_420 Hb_005237_060--Hb_073171_080 Hb_005701_040 Hb_005701_040 Hb_005237_060--Hb_005701_040 Hb_005237_060--Hb_012305_070 Hb_005237_060--Hb_000088_200 Hb_005237_060--Hb_000236_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
94.7004 25.3547 24.7656 11.156 79.0769 79.4287
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
43.1084 45.4468 23.9981 12.2558 7.93398

CAGE analysis