Hb_001671_010

Information

Type -
Description -
Location Contig1671: 5201-11444
Sequence    

Annotation

kegg
ID rcu:RCOM_0715740
description Spotted leaf protein, putative
nr
ID XP_012083144.1
description PREDICTED: U-box domain-containing protein 44-like [Jatropha curcas]
swissprot
ID Q9SFX2
description U-box domain-containing protein 43 OS=Arabidopsis thaliana GN=PUB43 PE=2 SV=1
trembl
ID B9SBC6
description Spotted leaf protein, putative OS=Ricinus communis GN=RCOM_0715740 PE=4 SV=1
Gene Ontology
ID GO:0004842
description u-box domain-containing protein 44-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15415: 5263-6477 , PASA_asmbl_15418: 7172-9128
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001671_010 0.0 - - PREDICTED: U-box domain-containing protein 44-like [Jatropha curcas]
2 Hb_004225_050 0.0697276684 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
3 Hb_015941_020 0.0706400662 - - -
4 Hb_008221_180 0.0761545638 - - PREDICTED: uncharacterized protein LOC105644223 isoform X1 [Jatropha curcas]
5 Hb_005496_130 0.0794860593 - - PREDICTED: activating signal cointegrator 1 complex subunit 2 isoform X2 [Jatropha curcas]
6 Hb_002725_120 0.0805754881 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05750, chloroplastic [Jatropha curcas]
7 Hb_005686_090 0.0824005089 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X1 [Jatropha curcas]
8 Hb_009486_060 0.0831073106 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]
9 Hb_188063_020 0.0831319512 - - conserved hypothetical protein [Ricinus communis]
10 Hb_009486_140 0.0843409805 - - PREDICTED: uncharacterized protein LOC105643248 [Jatropha curcas]
11 Hb_002849_100 0.0846081543 - - PREDICTED: mechanosensitive ion channel protein 1, mitochondrial [Jatropha curcas]
12 Hb_000291_050 0.0893339239 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105638874 isoform X1 [Jatropha curcas]
13 Hb_005116_050 0.0899755554 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02820, mitochondrial isoform X1 [Jatropha curcas]
14 Hb_086639_040 0.0901485341 - - PREDICTED: phosphatidylinositol 4-kinase gamma 7-like [Jatropha curcas]
15 Hb_028912_050 0.0912844768 - - PREDICTED: calmodulin-interacting protein 111 isoform X2 [Jatropha curcas]
16 Hb_009382_010 0.0926078999 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
17 Hb_006649_050 0.0926257663 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
18 Hb_001004_060 0.0929688181 - - PREDICTED: uncharacterized protein LOC105630220 isoform X4 [Jatropha curcas]
19 Hb_000883_060 0.0930309878 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 3-like [Jatropha curcas]
20 Hb_000866_260 0.0937993216 - - PREDICTED: F-box/kelch-repeat protein SKIP4 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001671_010 Hb_001671_010 Hb_004225_050 Hb_004225_050 Hb_001671_010--Hb_004225_050 Hb_015941_020 Hb_015941_020 Hb_001671_010--Hb_015941_020 Hb_008221_180 Hb_008221_180 Hb_001671_010--Hb_008221_180 Hb_005496_130 Hb_005496_130 Hb_001671_010--Hb_005496_130 Hb_002725_120 Hb_002725_120 Hb_001671_010--Hb_002725_120 Hb_005686_090 Hb_005686_090 Hb_001671_010--Hb_005686_090 Hb_028912_050 Hb_028912_050 Hb_004225_050--Hb_028912_050 Hb_188063_020 Hb_188063_020 Hb_004225_050--Hb_188063_020 Hb_006649_050 Hb_006649_050 Hb_004225_050--Hb_006649_050 Hb_000028_480 Hb_000028_480 Hb_004225_050--Hb_000028_480 Hb_002849_100 Hb_002849_100 Hb_004225_050--Hb_002849_100 Hb_001004_060 Hb_001004_060 Hb_004225_050--Hb_001004_060 Hb_001049_110 Hb_001049_110 Hb_015941_020--Hb_001049_110 Hb_010883_040 Hb_010883_040 Hb_015941_020--Hb_010883_040 Hb_015941_020--Hb_005686_090 Hb_018133_090 Hb_018133_090 Hb_015941_020--Hb_018133_090 Hb_000883_060 Hb_000883_060 Hb_015941_020--Hb_000883_060 Hb_007657_010 Hb_007657_010 Hb_008221_180--Hb_007657_010 Hb_000343_250 Hb_000343_250 Hb_008221_180--Hb_000343_250 Hb_009486_060 Hb_009486_060 Hb_008221_180--Hb_009486_060 Hb_000346_060 Hb_000346_060 Hb_008221_180--Hb_000346_060 Hb_000317_050 Hb_000317_050 Hb_008221_180--Hb_000317_050 Hb_008554_130 Hb_008554_130 Hb_005496_130--Hb_008554_130 Hb_000165_250 Hb_000165_250 Hb_005496_130--Hb_000165_250 Hb_000291_050 Hb_000291_050 Hb_005496_130--Hb_000291_050 Hb_009767_110 Hb_009767_110 Hb_005496_130--Hb_009767_110 Hb_005496_130--Hb_002725_120 Hb_000029_050 Hb_000029_050 Hb_005496_130--Hb_000029_050 Hb_002725_120--Hb_009767_110 Hb_002725_120--Hb_006649_050 Hb_002725_120--Hb_000291_050 Hb_003142_020 Hb_003142_020 Hb_002725_120--Hb_003142_020 Hb_002725_120--Hb_000165_250 Hb_005736_020 Hb_005736_020 Hb_005686_090--Hb_005736_020 Hb_001304_110 Hb_001304_110 Hb_005686_090--Hb_001304_110 Hb_002518_260 Hb_002518_260 Hb_005686_090--Hb_002518_260 Hb_029510_050 Hb_029510_050 Hb_005686_090--Hb_029510_050 Hb_001008_120 Hb_001008_120 Hb_005686_090--Hb_001008_120 Hb_005686_090--Hb_028912_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.50622 3.52668 2.84652 2.2436 4.1851 4.11401
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.41502 4.08913 5.75479 3.04649 7.24428

CAGE analysis