Hb_001671_020

Information

Type -
Description -
Location Contig1671: 11666-13492
Sequence    

Annotation

kegg
ID pop:POPTR_0002s17640g
description POPTRDRAFT_552315; hypothetical protein
nr
ID XP_012083145.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g08510 [Jatropha curcas]
swissprot
ID Q9FNN7
description Pentatricopeptide repeat-containing protein At5g08510 OS=Arabidopsis thaliana GN=PCMP-E20 PE=2 SV=1
trembl
ID A0A067K069
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14219 PE=4 SV=1
Gene Ontology
ID GO:0016787
description pentatricopeptide repeat-containing protein at5g08510

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15420: 11831-13507
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001671_020 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08510 [Jatropha curcas]
2 Hb_000567_260 0.0458496542 - - BnaA09g41440D [Brassica napus]
3 Hb_007380_070 0.0572754931 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
4 Hb_055062_030 0.0621701286 - - PREDICTED: mediator of RNA polymerase II transcription subunit 10b-like isoform X1 [Jatropha curcas]
5 Hb_002603_100 0.0657668645 - - ATATH9, putative [Ricinus communis]
6 Hb_189003_080 0.0666100076 - - PREDICTED: rab3 GTPase-activating protein non-catalytic subunit isoform X1 [Jatropha curcas]
7 Hb_001243_050 0.0684161312 - - PREDICTED: uncharacterized protein LOC105643776 [Jatropha curcas]
8 Hb_000200_340 0.0686745832 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
9 Hb_021650_030 0.0697908738 - - PREDICTED: uncharacterized protein LOC105642056 [Jatropha curcas]
10 Hb_028872_140 0.0706672972 - - PREDICTED: uncharacterized protein LOC105644767 isoform X1 [Jatropha curcas]
11 Hb_000554_020 0.0719933973 - - PREDICTED: pentatricopeptide repeat-containing protein At2g02980-like [Jatropha curcas]
12 Hb_000205_270 0.073420695 - - PREDICTED: uncharacterized protein LOC105632722 isoform X1 [Jatropha curcas]
13 Hb_020178_070 0.0762112693 - - Protein Z, putative [Ricinus communis]
14 Hb_007951_050 0.0764530923 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_000398_180 0.0785474826 - - hypothetical protein PRUPE_ppa009665mg [Prunus persica]
16 Hb_005062_070 0.0792600003 - - RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]
17 Hb_000754_060 0.0802818581 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
18 Hb_000457_150 0.0810672532 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
19 Hb_015001_020 0.0825030941 - - PREDICTED: la-related protein 6B [Jatropha curcas]
20 Hb_000836_070 0.0835736312 - - protein binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001671_020 Hb_001671_020 Hb_000567_260 Hb_000567_260 Hb_001671_020--Hb_000567_260 Hb_007380_070 Hb_007380_070 Hb_001671_020--Hb_007380_070 Hb_055062_030 Hb_055062_030 Hb_001671_020--Hb_055062_030 Hb_002603_100 Hb_002603_100 Hb_001671_020--Hb_002603_100 Hb_189003_080 Hb_189003_080 Hb_001671_020--Hb_189003_080 Hb_001243_050 Hb_001243_050 Hb_001671_020--Hb_001243_050 Hb_000614_230 Hb_000614_230 Hb_000567_260--Hb_000614_230 Hb_001329_300 Hb_001329_300 Hb_000567_260--Hb_001329_300 Hb_000567_260--Hb_189003_080 Hb_001248_130 Hb_001248_130 Hb_000567_260--Hb_001248_130 Hb_000567_260--Hb_055062_030 Hb_006541_030 Hb_006541_030 Hb_007380_070--Hb_006541_030 Hb_000398_180 Hb_000398_180 Hb_007380_070--Hb_000398_180 Hb_003929_160 Hb_003929_160 Hb_007380_070--Hb_003929_160 Hb_005539_350 Hb_005539_350 Hb_007380_070--Hb_005539_350 Hb_028872_140 Hb_028872_140 Hb_007380_070--Hb_028872_140 Hb_016065_010 Hb_016065_010 Hb_055062_030--Hb_016065_010 Hb_005488_010 Hb_005488_010 Hb_055062_030--Hb_005488_010 Hb_008289_060 Hb_008289_060 Hb_055062_030--Hb_008289_060 Hb_008453_090 Hb_008453_090 Hb_055062_030--Hb_008453_090 Hb_023386_080 Hb_023386_080 Hb_002603_100--Hb_023386_080 Hb_000376_050 Hb_000376_050 Hb_002603_100--Hb_000376_050 Hb_022250_040 Hb_022250_040 Hb_002603_100--Hb_022250_040 Hb_000956_010 Hb_000956_010 Hb_002603_100--Hb_000956_010 Hb_002603_100--Hb_001243_050 Hb_008695_210 Hb_008695_210 Hb_189003_080--Hb_008695_210 Hb_002016_110 Hb_002016_110 Hb_189003_080--Hb_002016_110 Hb_002026_180 Hb_002026_180 Hb_189003_080--Hb_002026_180 Hb_189003_080--Hb_001248_130 Hb_001243_050--Hb_000376_050 Hb_006447_010 Hb_006447_010 Hb_001243_050--Hb_006447_010 Hb_001243_050--Hb_022250_040 Hb_002307_030 Hb_002307_030 Hb_001243_050--Hb_002307_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.03841 2.70576 1.62221 1.51624 4.68997 6.83412
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.13032 6.51686 7.6439 2.23551 1.46356

CAGE analysis