Hb_001671_060

Information

Type -
Description -
Location Contig1671: 53393-54436
Sequence    

Annotation

kegg
ID rcu:RCOM_0716000
description fad NAD binding oxidoreductases, putative
nr
ID XP_002523301.1
description fad NAD binding oxidoreductases, putative [Ricinus communis]
swissprot
ID Q9T096
description Protein yippee-like At4g27745 OS=Arabidopsis thaliana GN=At4g27745 PE=3 SV=2
trembl
ID B9SBD2
description Protein yippee-like OS=Ricinus communis GN=RCOM_0716000 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15428: 53590-54825
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001671_060 0.0 - - fad NAD binding oxidoreductases, putative [Ricinus communis]
2 Hb_000250_010 0.1377505038 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
3 Hb_000107_070 0.1380103003 - - PREDICTED: uncharacterized protein LOC105641007 [Jatropha curcas]
4 Hb_007120_070 0.1418372183 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
5 Hb_000803_050 0.1563503657 - - PREDICTED: uncharacterized protein LOC105648296 [Jatropha curcas]
6 Hb_001157_220 0.1578895906 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000178_110 0.1585269856 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000714_010 0.1601856652 - - PREDICTED: salt stress-induced hydrophobic peptide ESI3 [Vitis vinifera]
9 Hb_003050_070 0.1634477926 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003020_310 0.1639356566 - - glycosyltransferase, putative [Ricinus communis]
11 Hb_023214_010 0.1666406201 - - aberrant lateral root formation 1 family protein [Populus trichocarpa]
12 Hb_008864_060 0.1711353318 - - PREDICTED: uncharacterized protein LOC105634361 [Jatropha curcas]
13 Hb_048937_030 0.1721153624 - - hypothetical protein RCOM_0231790 [Ricinus communis]
14 Hb_026428_010 0.1724488993 - - copper transport protein ATOX1 [Hevea brasiliensis]
15 Hb_149683_010 0.1730099568 rubber biosynthesis Gene Name: REF2 RecName: Full=Rubber elongation factor protein; Short=REF; AltName: Allergen=Hev b 1 [Hevea brasiliensis]
16 Hb_006018_030 0.173626106 - - PREDICTED: uncharacterized protein LOC105108875 isoform X1 [Populus euphratica]
17 Hb_159191_010 0.1738543765 - - protease inhibitor protein [Hevea brasiliensis]
18 Hb_002235_230 0.1740263198 - - latex abundant protein 1 [Hevea brasiliensis]
19 Hb_011671_400 0.1750534077 - - PREDICTED: cyclin-U4-1 [Jatropha curcas]
20 Hb_000836_500 0.1784771076 - - Late embryogenesis abundant protein Lea14-A, putative [Ricinus communis]

Gene co-expression network

sample Hb_001671_060 Hb_001671_060 Hb_000250_010 Hb_000250_010 Hb_001671_060--Hb_000250_010 Hb_000107_070 Hb_000107_070 Hb_001671_060--Hb_000107_070 Hb_007120_070 Hb_007120_070 Hb_001671_060--Hb_007120_070 Hb_000803_050 Hb_000803_050 Hb_001671_060--Hb_000803_050 Hb_001157_220 Hb_001157_220 Hb_001671_060--Hb_001157_220 Hb_000178_110 Hb_000178_110 Hb_001671_060--Hb_000178_110 Hb_008864_060 Hb_008864_060 Hb_000250_010--Hb_008864_060 Hb_000714_010 Hb_000714_010 Hb_000250_010--Hb_000714_010 Hb_011671_400 Hb_011671_400 Hb_000250_010--Hb_011671_400 Hb_001959_260 Hb_001959_260 Hb_000250_010--Hb_001959_260 Hb_003050_070 Hb_003050_070 Hb_000250_010--Hb_003050_070 Hb_075449_050 Hb_075449_050 Hb_000107_070--Hb_075449_050 Hb_023214_010 Hb_023214_010 Hb_000107_070--Hb_023214_010 Hb_001035_040 Hb_001035_040 Hb_000107_070--Hb_001035_040 Hb_002000_110 Hb_002000_110 Hb_000107_070--Hb_002000_110 Hb_001741_090 Hb_001741_090 Hb_000107_070--Hb_001741_090 Hb_003020_310 Hb_003020_310 Hb_000107_070--Hb_003020_310 Hb_007120_070--Hb_003020_310 Hb_029584_140 Hb_029584_140 Hb_007120_070--Hb_029584_140 Hb_007120_070--Hb_000178_110 Hb_003038_180 Hb_003038_180 Hb_007120_070--Hb_003038_180 Hb_000062_580 Hb_000062_580 Hb_007120_070--Hb_000062_580 Hb_007120_070--Hb_001035_040 Hb_026428_010 Hb_026428_010 Hb_000803_050--Hb_026428_010 Hb_000235_010 Hb_000235_010 Hb_000803_050--Hb_000235_010 Hb_000803_050--Hb_003050_070 Hb_011004_010 Hb_011004_010 Hb_000803_050--Hb_011004_010 Hb_000575_020 Hb_000575_020 Hb_000803_050--Hb_000575_020 Hb_001157_220--Hb_000803_050 Hb_001157_220--Hb_008864_060 Hb_000614_100 Hb_000614_100 Hb_001157_220--Hb_000614_100 Hb_001780_070 Hb_001780_070 Hb_001157_220--Hb_001780_070 Hb_002099_050 Hb_002099_050 Hb_001157_220--Hb_002099_050 Hb_000836_500 Hb_000836_500 Hb_000178_110--Hb_000836_500 Hb_000178_110--Hb_029584_140 Hb_012725_110 Hb_012725_110 Hb_000178_110--Hb_012725_110 Hb_012799_060 Hb_012799_060 Hb_000178_110--Hb_012799_060 Hb_000580_170 Hb_000580_170 Hb_000178_110--Hb_000580_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.6323 0.225877 1.59751 1.60814 7.65524 2.55536
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
79.8762 41.4585 36.3465 1.0873 0.415886

CAGE analysis