Hb_001671_080

Information

Type -
Description -
Location Contig1671: 75935-80388
Sequence    

Annotation

kegg
ID rcu:RCOM_0253240
description amino acid binding protein, putative
nr
ID XP_002533376.1
description amino acid binding protein, putative [Ricinus communis]
swissprot
ID Q9SJM1
description ACT domain-containing protein ACR10 OS=Arabidopsis thaliana GN=ACR10 PE=2 SV=1
trembl
ID B9T557
description Amino acid binding protein, putative OS=Ricinus communis GN=RCOM_0253240 PE=4 SV=1
Gene Ontology
ID GO:0016597
description amino acid binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15430: 75976-80937
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001671_080 0.0 - - amino acid binding protein, putative [Ricinus communis]
2 Hb_004223_130 0.067351766 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003052_100 0.0796000658 - - ubiquitin-protein ligase, putative [Ricinus communis]
4 Hb_158092_070 0.082471877 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
5 Hb_000975_290 0.0827855422 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
6 Hb_007908_020 0.0856878728 - - zinc finger family protein [Populus trichocarpa]
7 Hb_001047_020 0.0864732672 - - -
8 Hb_000317_030 0.0897626263 transcription factor TF Family: ULT PREDICTED: protein ULTRAPETALA 1-like [Jatropha curcas]
9 Hb_001195_690 0.0910792729 - - PREDICTED: E3 ubiquitin-protein ligase RNF185 [Jatropha curcas]
10 Hb_000282_060 0.0913959933 - - PREDICTED: uncharacterized protein LOC105638155 [Jatropha curcas]
11 Hb_000029_030 0.0915185503 - - PREDICTED: mitochondrial fission protein ELM1 [Jatropha curcas]
12 Hb_000676_220 0.0925882057 - - ADP-ribosylation factor, putative [Ricinus communis]
13 Hb_000732_260 0.0928962333 - - PREDICTED: telomerase Cajal body protein 1 [Jatropha curcas]
14 Hb_008066_010 0.0939608625 - - PREDICTED: translation initiation factor eIF-2B subunit alpha-like [Jatropha curcas]
15 Hb_005062_070 0.094526382 - - RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]
16 Hb_001248_050 0.0952780492 - - PREDICTED: PXMP2/4 family protein 4-like [Jatropha curcas]
17 Hb_000190_140 0.0957544668 transcription factor TF Family: TRAF PREDICTED: ETO1-like protein 1 [Jatropha curcas]
18 Hb_010710_030 0.0978636826 transcription factor TF Family: G2-like PREDICTED: transcription factor LUX [Jatropha curcas]
19 Hb_002681_020 0.0985624284 - - aldose 1-epimerase, putative [Ricinus communis]
20 Hb_000120_800 0.0988555158 - - PREDICTED: rab proteins geranylgeranyltransferase component A [Jatropha curcas]

Gene co-expression network

sample Hb_001671_080 Hb_001671_080 Hb_004223_130 Hb_004223_130 Hb_001671_080--Hb_004223_130 Hb_003052_100 Hb_003052_100 Hb_001671_080--Hb_003052_100 Hb_158092_070 Hb_158092_070 Hb_001671_080--Hb_158092_070 Hb_000975_290 Hb_000975_290 Hb_001671_080--Hb_000975_290 Hb_007908_020 Hb_007908_020 Hb_001671_080--Hb_007908_020 Hb_001047_020 Hb_001047_020 Hb_001671_080--Hb_001047_020 Hb_000017_120 Hb_000017_120 Hb_004223_130--Hb_000017_120 Hb_004223_130--Hb_158092_070 Hb_133271_020 Hb_133271_020 Hb_004223_130--Hb_133271_020 Hb_001030_120 Hb_001030_120 Hb_004223_130--Hb_001030_120 Hb_002272_250 Hb_002272_250 Hb_004223_130--Hb_002272_250 Hb_003052_100--Hb_158092_070 Hb_001195_690 Hb_001195_690 Hb_003052_100--Hb_001195_690 Hb_002078_450 Hb_002078_450 Hb_003052_100--Hb_002078_450 Hb_004657_020 Hb_004657_020 Hb_003052_100--Hb_004657_020 Hb_071736_020 Hb_071736_020 Hb_003052_100--Hb_071736_020 Hb_158092_070--Hb_133271_020 Hb_004221_010 Hb_004221_010 Hb_158092_070--Hb_004221_010 Hb_003392_040 Hb_003392_040 Hb_158092_070--Hb_003392_040 Hb_158092_070--Hb_001030_120 Hb_158092_070--Hb_000975_290 Hb_002890_280 Hb_002890_280 Hb_000975_290--Hb_002890_280 Hb_000975_290--Hb_133271_020 Hb_000975_290--Hb_001030_120 Hb_002686_270 Hb_002686_270 Hb_000975_290--Hb_002686_270 Hb_000975_290--Hb_071736_020 Hb_000025_200 Hb_000025_200 Hb_007908_020--Hb_000025_200 Hb_002027_130 Hb_002027_130 Hb_007908_020--Hb_002027_130 Hb_002477_160 Hb_002477_160 Hb_007908_020--Hb_002477_160 Hb_000120_950 Hb_000120_950 Hb_007908_020--Hb_000120_950 Hb_000001_020 Hb_000001_020 Hb_007908_020--Hb_000001_020 Hb_001584_330 Hb_001584_330 Hb_007908_020--Hb_001584_330 Hb_001840_080 Hb_001840_080 Hb_001047_020--Hb_001840_080 Hb_002215_050 Hb_002215_050 Hb_001047_020--Hb_002215_050 Hb_000120_800 Hb_000120_800 Hb_001047_020--Hb_000120_800 Hb_001047_020--Hb_002686_270 Hb_000446_090 Hb_000446_090 Hb_001047_020--Hb_000446_090 Hb_004046_010 Hb_004046_010 Hb_001047_020--Hb_004046_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
44.4477 10.4001 8.07674 8.37871 23.6902 37.8246
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
48.1888 24.3525 38.263 12.6703 4.91614

CAGE analysis