Hb_001671_090

Information

Type -
Description -
Location Contig1671: 84784-91232
Sequence    

Annotation

kegg
ID tcc:TCM_022913
description DNA/RNA polymerases superfamily protein
nr
ID XP_007027952.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID A0A061F1Q5
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_022913 PE=4 SV=1
Gene Ontology
ID GO:0005488
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001671_090 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_003333_040 0.1697958903 - - ankyrin repeat-containing protein, putative [Ricinus communis]
3 Hb_032733_020 0.2140974025 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like isoform X4 [Citrus sinensis]
4 Hb_013420_060 0.227993255 - - NADH dehydrogenase subunit 7 [Nymphaea sp. Bergthorsson 0401]
5 Hb_053998_020 0.2388768706 - - -
6 Hb_114271_010 0.2599944254 - - hypothetical protein JCGZ_19461 [Jatropha curcas]
7 Hb_000122_260 0.2648864766 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 1-like [Jatropha curcas]
8 Hb_005332_150 0.2689514296 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46610 [Jatropha curcas]
9 Hb_097021_010 0.2701564539 - - hypothetical protein POPTR_0075s00200g, partial [Populus trichocarpa]
10 Hb_002798_080 0.2722243107 - - hypothetical protein VITISV_043745 [Vitis vinifera]
11 Hb_002759_040 0.2786686727 - - BnaA09g29830D [Brassica napus]
12 Hb_002014_070 0.2788693717 - - PREDICTED: probable chlorophyll(ide) b reductase NYC1, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_139365_010 0.279454303 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
14 Hb_133047_020 0.2837574836 - - lysophosphatidic acid acyltransferase, putative [Ricinus communis]
15 Hb_001942_020 0.284863869 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP16-3, chloroplastic [Jatropha curcas]
16 Hb_000914_190 0.2851296677 - - xanthine dehydrogenase, putative [Ricinus communis]
17 Hb_032260_110 0.2867528563 - - conserved hypothetical protein [Ricinus communis]
18 Hb_166127_030 0.2886952565 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_168031_020 0.2900515832 - - PREDICTED: uncharacterized protein LOC105646684 isoform X2 [Jatropha curcas]
20 Hb_122028_010 0.2912994947 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]

Gene co-expression network

sample Hb_001671_090 Hb_001671_090 Hb_003333_040 Hb_003333_040 Hb_001671_090--Hb_003333_040 Hb_032733_020 Hb_032733_020 Hb_001671_090--Hb_032733_020 Hb_013420_060 Hb_013420_060 Hb_001671_090--Hb_013420_060 Hb_053998_020 Hb_053998_020 Hb_001671_090--Hb_053998_020 Hb_114271_010 Hb_114271_010 Hb_001671_090--Hb_114271_010 Hb_000122_260 Hb_000122_260 Hb_001671_090--Hb_000122_260 Hb_003333_040--Hb_013420_060 Hb_007413_030 Hb_007413_030 Hb_003333_040--Hb_007413_030 Hb_003333_040--Hb_032733_020 Hb_003333_040--Hb_053998_020 Hb_003333_040--Hb_114271_010 Hb_032733_020--Hb_114271_010 Hb_032733_020--Hb_013420_060 Hb_087797_010 Hb_087797_010 Hb_032733_020--Hb_087797_010 Hb_001691_170 Hb_001691_170 Hb_032733_020--Hb_001691_170 Hb_002005_050 Hb_002005_050 Hb_032733_020--Hb_002005_050 Hb_000574_330 Hb_000574_330 Hb_013420_060--Hb_000574_330 Hb_004712_200 Hb_004712_200 Hb_013420_060--Hb_004712_200 Hb_011900_020 Hb_011900_020 Hb_013420_060--Hb_011900_020 Hb_000029_380 Hb_000029_380 Hb_013420_060--Hb_000029_380 Hb_002014_070 Hb_002014_070 Hb_053998_020--Hb_002014_070 Hb_062273_010 Hb_062273_010 Hb_053998_020--Hb_062273_010 Hb_041813_060 Hb_041813_060 Hb_053998_020--Hb_041813_060 Hb_001523_030 Hb_001523_030 Hb_053998_020--Hb_001523_030 Hb_102602_020 Hb_102602_020 Hb_053998_020--Hb_102602_020 Hb_032260_110 Hb_032260_110 Hb_114271_010--Hb_032260_110 Hb_004108_190 Hb_004108_190 Hb_114271_010--Hb_004108_190 Hb_129420_010 Hb_129420_010 Hb_114271_010--Hb_129420_010 Hb_114271_010--Hb_013420_060 Hb_114271_010--Hb_002005_050 Hb_000108_250 Hb_000108_250 Hb_000122_260--Hb_000108_250 Hb_002894_090 Hb_002894_090 Hb_000122_260--Hb_002894_090 Hb_002010_110 Hb_002010_110 Hb_000122_260--Hb_002010_110 Hb_010098_040 Hb_010098_040 Hb_000122_260--Hb_010098_040 Hb_000975_050 Hb_000975_050 Hb_000122_260--Hb_000975_050 Hb_000966_040 Hb_000966_040 Hb_000122_260--Hb_000966_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0232289 0.00668924 0.0246916 0.00872194 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0139579 0.0114866 0.0934589

CAGE analysis